1.570 Å
X-ray
2011-06-27
Name: | Queuine tRNA-ribosyltransferase |
---|---|
ID: | TGT_ZYMMO |
AC: | P28720 |
Organism: | Zymomonas mobilis subsp. mobilis |
Reign: | Bacteria |
TaxID: | 264203 |
EC Number: | 2.4.2.29 |
Chain Name: | Percentage of Residues within binding site |
---|---|
A | 100 % |
B-Factor: | 17.089 |
---|---|
Number of residues: | 39 |
Including | |
Standard Amino Acids: | 34 |
Non Standard Amino Acids: | 0 |
Water Molecules: | 5 |
Cofactors: | |
Metals: |
Ligandability | Volume (Å3) |
---|---|
0.402 | 324.000 |
% Hydrophobic | % Polar |
---|---|
55.21 | 44.79 |
According to VolSite |
HET Code: | AEK |
---|---|
Formula: | C18H25N6O |
Molecular weight: | 341.431 g/mol |
DrugBank ID: | - |
Buried Surface Area: | 66.54 % |
Polar Surface area: | 98.78 Å2 |
Number of | |
---|---|
H-Bond Acceptors: | 4 |
H-Bond Donors: | 4 |
Rings: | 4 |
Aromatic rings: | 2 |
Anionic atoms: | 0 |
Cationic atoms: | 1 |
Rule of Five Violation: | 0 |
Rotatable Bonds: | 6 |
X | Y | Z |
---|---|---|
15.7855 | 16.6833 | 19.2833 |
Represent the protein/ligand binding mode, centered on the ligand
Dashed lines represents hydrogen bonds and metal interactions
Green residue labels for amino acids with hydrophobic contacts (green lines) to the ligand
Ligand | Protein | Interaction | |||
---|---|---|---|---|---|
Atom | Atom | Residue | Distance (Å) | Angle (°) | Type |
C10 | CG1 | VAL- 45 | 3.68 | 0 | Hydrophobic |
C8 | CD1 | LEU- 68 | 3.99 | 0 | Hydrophobic |
C10 | CB | ASN- 70 | 3.89 | 0 | Hydrophobic |
C9 | CB | ASP- 102 | 3.85 | 0 | Hydrophobic |
DuAr | DuAr | TYR- 106 | 3.9 | 0 | Aromatic Face/Face |
C4 | CG | TYR- 106 | 3.7 | 0 | Hydrophobic |
N5 | OD1 | ASP- 156 | 3.47 | 125.01 | H-Bond (Ligand Donor) |
N5 | OD2 | ASP- 156 | 2.79 | 169.29 | H-Bond (Ligand Donor) |
C17 | SG | CYS- 158 | 3.38 | 0 | Hydrophobic |
O1 | NE2 | GLN- 203 | 2.92 | 155.44 | H-Bond (Protein Donor) |
O1 | N | GLY- 230 | 2.8 | 140.53 | H-Bond (Protein Donor) |
N6 | O | LEU- 231 | 2.88 | 151.4 | H-Bond (Ligand Donor) |
N1 | O | ALA- 232 | 2.8 | 155.84 | H-Bond (Ligand Donor) |
C1 | CB | ALA- 232 | 4.38 | 0 | Hydrophobic |
C4 | CB | MET- 260 | 4.08 | 0 | Hydrophobic |
C16 | CB | MET- 260 | 4.02 | 0 | Hydrophobic |
N3 | OD2 | ASP- 280 | 2.66 | 153.59 | H-Bond (Ligand Donor) |
N3 | OD2 | ASP- 280 | 2.66 | 0 | Ionic (Ligand Cationic) |
N3 | OD1 | ASP- 280 | 3.58 | 0 | Ionic (Ligand Cationic) |
C11 | CG1 | VAL- 282 | 4.38 | 0 | Hydrophobic |
N4 | O | HOH- 543 | 3.2 | 179.98 | H-Bond (Protein Donor) |