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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Cavity similarities measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Cavities are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299

Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
2w71L23Biotin carboxylase6.3.4.14

Complex with similar cavities

PDB ID HET Uniprot Name EC Number Cavity
Similarity		 Align
2w71L23Biotin carboxylase6.3.4.141.000
2w6nOA2Biotin carboxylase6.3.4.140.542
2v58LZJBiotin carboxylase6.3.4.140.523
2vr1ATFBiotin carboxylase6.3.4.140.522
2v5aLZLBiotin carboxylase6.3.4.140.516
2w6oOA3Biotin carboxylase6.3.4.140.500
2v59LZKBiotin carboxylase6.3.4.140.489
2w6pOA4Biotin carboxylase6.3.4.140.488
2w6zL21Biotin carboxylase6.3.4.140.488
4mv4ACPBiotin carboxylase6.3.4.140.487
2w6qOA5Biotin carboxylase6.3.4.140.468
2w6mOA1Biotin carboxylase6.3.4.140.450
3jzfJZKBiotin carboxylase6.3.4.140.442
4mv8ACPBiotin carboxylase6.3.4.140.440