2.400 Å
X-ray
2008-10-02
| Name: | Biotin carboxylase |
|---|---|
| ID: | ACCC_ECOLI |
| AC: | P24182 |
| Organism: | Escherichia coli |
| Reign: | Bacteria |
| TaxID: | 83333 |
| EC Number: | 6.3.4.14 |
| Chain Name: | Percentage of Residues within binding site |
|---|---|
| B | 100 % |
| B-Factor: | 38.133 |
|---|---|
| Number of residues: | 32 |
| Including | |
| Standard Amino Acids: | 30 |
| Non Standard Amino Acids: | 0 |
| Water Molecules: | 2 |
| Cofactors: | |
| Metals: | |
| Ligandability | Volume (Å3) |
|---|---|
| 0.314 | 712.125 |
| % Hydrophobic | % Polar |
|---|---|
| 36.97 | 63.03 |
| According to VolSite | |

| HET Code: | LZK |
|---|---|
| Formula: | C15H15N5O2 |
| Molecular weight: | 297.312 g/mol |
| DrugBank ID: | DB08145 |
| Buried Surface Area: | 60.8 % |
| Polar Surface area: | 109.17 Å2 |
| Number of | |
|---|---|
| H-Bond Acceptors: | 7 |
| H-Bond Donors: | 2 |
| Rings: | 3 |
| Aromatic rings: | 3 |
| Anionic atoms: | 0 |
| Cationic atoms: | 0 |
| Rule of Five Violation: | 0 |
| Rotatable Bonds: | 3 |
| X | Y | Z |
|---|---|---|
| -14.2558 | 1.73091 | -2.69386 |
Image generated by PoseView
Represent the protein/ligand binding mode, centered on the ligand
Dashed lines represents hydrogen bonds and metal interactions
Green residue labels for amino acids with hydrophobic contacts (green lines) to the ligand
| Ligand | Protein | Interaction | |||
|---|---|---|---|---|---|
| Atom | Atom | Residue | Distance (Å) | Angle (°) | Type |
| N17 | NZ | LYS- 159 | 3.16 | 143.95 | H-Bond (Protein Donor) |
| N12 | NZ | LYS- 159 | 2.87 | 130.93 | H-Bond (Protein Donor) |
| C45 | SD | MET- 169 | 4.47 | 0 | Hydrophobic |
| N20 | OE2 | GLU- 201 | 3.03 | 154.2 | H-Bond (Ligand Donor) |
| N20 | O | LYS- 202 | 2.69 | 158.7 | H-Bond (Ligand Donor) |
| N18 | N | LEU- 204 | 3.03 | 170.19 | H-Bond (Protein Donor) |
| C43 | CB | HIS- 209 | 4.07 | 0 | Hydrophobic |
| C14 | CG | GLN- 233 | 4.5 | 0 | Hydrophobic |
| C43 | CD2 | LEU- 278 | 3.77 | 0 | Hydrophobic |
| C11 | CD1 | LEU- 278 | 3.65 | 0 | Hydrophobic |
| C43 | CG2 | ILE- 437 | 4.03 | 0 | Hydrophobic |
| C1 | CD1 | ILE- 437 | 3.64 | 0 | Hydrophobic |
| C1 | CD1 | ILE- 437 | 3.64 | 0 | Hydrophobic |