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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Cavity similarities measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Cavities are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299

Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
2gqpPA7Endoplasmin

Complex with similar cavities

PDB ID HET Uniprot Name EC Number Cavity
Similarity		 Align
2gqpPA7Endoplasmin/1.000
2hchN5AEndoplasmin/0.654
1u0zRDCEndoplasmin/0.593
2fypRDEEndoplasmin/0.558
1yszNECEndoplasmin/0.555
1u2oNECEndoplasmin/0.553
1qy8RDIEndoplasmin/0.541
2hg1N5OEndoplasmin/0.538
2gfdRDAEndoplasmin/0.533
4fcr0TMHeat shock protein HSP 90-alpha/0.531
1qy5NECEndoplasmin/0.529
3rlr3RRHeat shock protein HSP 90-alpha/0.528
3ekoPYUHeat shock protein HSP 90-alpha/0.521
3r4pFU7Heat shock protein HSP 90-alpha/0.520
3rlq3RQHeat shock protein HSP 90-alpha/0.515
3vhaVHAHeat shock protein HSP 90-alpha/0.513
1byqADPHeat shock protein HSP 90-alpha/0.512
3ekrPY9Heat shock protein HSP 90-alpha/0.512
2xd6XD6ATP-dependent molecular chaperone HSP82/0.510
2werRDCATP-dependent molecular chaperone HSP82/0.508
3hekBD0Heat shock protein HSP 90-alpha/0.508
2bz5AB4Heat shock protein HSP 90-alpha/0.506
2iwuNP5ATP-dependent molecular chaperone HSP82/0.503
1u0yPA7Endoplasmin/0.499
2exlGDMEndoplasmin/0.494
2yegXQGHeat shock protein HSP 90-alpha/0.492
2wi6ZZ6Heat shock protein HSP 90-alpha/0.491
4bqjXKLHeat shock protein HSP 90-alpha/0.486
2wi72KLHeat shock protein HSP 90-alpha/0.484
2wepADPATP-dependent molecular chaperone HSP82/0.483
2xabVHDHeat shock protein HSP 90-alpha/0.483
2yefANPHeat shock protein HSP 90-alpha/0.483
3hhu819Heat shock protein HSP 90-alpha/0.483
3k974CDHeat shock protein HSP 90-alpha/0.482
3hyz42CHeat shock protein HSP 90-alpha/0.481
3t10ACPHeat shock protein HSP 90-alpha/0.480
4jqlVJ6Heat shock protein HSP 90-alpha/0.478
3whaWHAHeat shock protein HSP 90-alpha/0.477
1yc14BCHeat shock protein HSP 90-alpha/0.476
3t1kANPHeat shock protein HSP 90-alpha/0.474
3k981RCHeat shock protein HSP 90-alpha/0.473
4ce3L4VATP-dependent molecular chaperone HSP82/0.470
2wi5ZZ5Heat shock protein HSP 90-alpha/0.469
2xhtC0YHeat shock protein HSP 90-alpha/0.469
2qg0A94Heat shock protein HSP 90-alpha/0.465
2breKJ2ATP-dependent molecular chaperone HSP82/0.464
3b28B2XHeat shock protein HSP 90-alpha/0.464
3r4nFU5Heat shock protein HSP 90-alpha/0.464
4gqtADPHeat shock protein 90/0.464
4xc0ACPHeat shock cognate 90 kDa protein/0.464
4eftEFTHeat shock protein HSP 90-alpha/0.462
1am1ADPATP-dependent molecular chaperone HSP82/0.461
2xk2ADPHeat shock protein HSP 90-alpha/0.460
3ft8MOJHeat shock protein HSP 90-alpha/0.459
3k99PFTHeat shock protein HSP 90-alpha/0.459
4ce17FKATP-dependent molecular chaperone HSP82/0.459
3t2sAGSHeat shock protein HSP 90-alpha/0.458
1yc34BCHeat shock protein HSP 90-alpha/0.457
2byi2DDHeat shock protein HSP 90-alpha/0.457
1yt0ADPEndoplasmin/0.456
3c11GDMATP-dependent molecular chaperone HSP82/0.455
1osfKOSHeat shock protein HSP 90-alpha/0.453
1y4sADPChaperone protein HtpG/0.453
5f5rANPHeat shock protein 75 kDa, mitochondrial/0.452
2byh2D7Heat shock protein HSP 90-alpha/0.451
4ce2BO5ATP-dependent molecular chaperone HSP82/0.451
1bgqRDCATP-dependent molecular chaperone HSP82/0.450
2bt0CT5Heat shock protein HSP 90-alpha/0.449
2xx213CATP-dependent molecular chaperone HSP82/0.449
2xhrC0PHeat shock protein HSP 90-alpha/0.448
1bwsNDPGDP-L-fucose synthase/0.446
4xcjADPHeat shock cognate 90 kDa protein/0.446
2vbdV10Isopenicillin N synthase1.21.3.10.443
2xcmADPCytosolic heat shock protein 90/0.443
2xjxXJXHeat shock protein HSP 90-alpha/0.443
2yee2ECHeat shock protein HSP 90-alpha/0.440
3q5kD1UHeat shock protein 83-1/0.440