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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Cavity similarities measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Cavities are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299

Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
1zx1CB1Ribosyldihydronicotinamide dehydrogenase [quinone]

Complex with similar cavities

PDB ID HET Uniprot Name EC Number Cavity
Similarity		 Align
1zx1CB1Ribosyldihydronicotinamide dehydrogenase [quinone]/1.000
3ox1695Ribosyldihydronicotinamide dehydrogenase [quinone]/0.664
3nhfVVVRibosyldihydronicotinamide dehydrogenase [quinone]/0.594
4zvmDM2Ribosyldihydronicotinamide dehydrogenase [quinone]/0.582
3nhkVAPRibosyldihydronicotinamide dehydrogenase [quinone]/0.580
3nhyA7BRibosyldihydronicotinamide dehydrogenase [quinone]/0.580
4qohSTLRibosyldihydronicotinamide dehydrogenase [quinone]/0.576
3nhwZXZRibosyldihydronicotinamide dehydrogenase [quinone]/0.561
2qmzLDPRibosyldihydronicotinamide dehydrogenase [quinone]/0.558
3uxhUXHRibosyldihydronicotinamide dehydrogenase [quinone]/0.535
2bzsCB1Ribosyldihydronicotinamide dehydrogenase [quinone]/0.531
3nhpHGZRibosyldihydronicotinamide dehydrogenase [quinone]/0.523
3ox34X4Ribosyldihydronicotinamide dehydrogenase [quinone]/0.519
1sg0STLRibosyldihydronicotinamide dehydrogenase [quinone]/0.516
3nhjA2ZRibosyldihydronicotinamide dehydrogenase [quinone]/0.515
3uxe465Ribosyldihydronicotinamide dehydrogenase [quinone]/0.508
3nhlYTRRibosyldihydronicotinamide dehydrogenase [quinone]/0.501
3nfrEWQRibosyldihydronicotinamide dehydrogenase [quinone]/0.500
4gqiM49Ribosyldihydronicotinamide dehydrogenase [quinone]/0.499
3nhrRZWRibosyldihydronicotinamide dehydrogenase [quinone]/0.495
3o73O73Ribosyldihydronicotinamide dehydrogenase [quinone]/0.486
4fgj1PQRibosyldihydronicotinamide dehydrogenase [quinone]/0.473
3owxXRARibosyldihydronicotinamide dehydrogenase [quinone]/0.470
3gamMXXRibosyldihydronicotinamide dehydrogenase [quinone]/0.462
4gr9372Ribosyldihydronicotinamide dehydrogenase [quinone]/0.462
3ox279XRibosyldihydronicotinamide dehydrogenase [quinone]/0.450
1kbo340NAD(P)H dehydrogenase [quinone] 11.6.5.20.440