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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Binding site similarity measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Binding Sites are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299
Binding Sites are considered as similar when the similarity value is greater than 0.44

Reference Protein Data Bank Entry :
PDB IDHETUniprot NameEC Number
4gqiM49Ribosyldihydronicotinamide dehydrogenase [quinone]

Complex with similar binding sites

PDB ID HET Uniprot Name EC Number Binding Site
Similarity		 Align
4gqiM49Ribosyldihydronicotinamide dehydrogenase [quinone]/1.000
3uxhUXHRibosyldihydronicotinamide dehydrogenase [quinone]/0.751
3nhjA2ZRibosyldihydronicotinamide dehydrogenase [quinone]/0.685
3ox34X4Ribosyldihydronicotinamide dehydrogenase [quinone]/0.677
3nhkVAPRibosyldihydronicotinamide dehydrogenase [quinone]/0.670
3nhfVVVRibosyldihydronicotinamide dehydrogenase [quinone]/0.652
3nhlYTRRibosyldihydronicotinamide dehydrogenase [quinone]/0.644
4zvmDM2Ribosyldihydronicotinamide dehydrogenase [quinone]/0.631
3ox1695Ribosyldihydronicotinamide dehydrogenase [quinone]/0.629
3o73O73Ribosyldihydronicotinamide dehydrogenase [quinone]/0.624
3nhwZXZRibosyldihydronicotinamide dehydrogenase [quinone]/0.615
3nhpHGZRibosyldihydronicotinamide dehydrogenase [quinone]/0.613
3owxXRARibosyldihydronicotinamide dehydrogenase [quinone]/0.608
2bzsCB1Ribosyldihydronicotinamide dehydrogenase [quinone]/0.605
4gr9372Ribosyldihydronicotinamide dehydrogenase [quinone]/0.603
4fgj1PQRibosyldihydronicotinamide dehydrogenase [quinone]/0.594
3nfrEWQRibosyldihydronicotinamide dehydrogenase [quinone]/0.586
3uxe465Ribosyldihydronicotinamide dehydrogenase [quinone]/0.575
1sg0STLRibosyldihydronicotinamide dehydrogenase [quinone]/0.570
3ox279XRibosyldihydronicotinamide dehydrogenase [quinone]/0.566
3nhuM42Ribosyldihydronicotinamide dehydrogenase [quinone]/0.563
3nhrRZWRibosyldihydronicotinamide dehydrogenase [quinone]/0.559
4qohSTLRibosyldihydronicotinamide dehydrogenase [quinone]/0.552
1zx1CB1Ribosyldihydronicotinamide dehydrogenase [quinone]/0.550
3nhyA7BRibosyldihydronicotinamide dehydrogenase [quinone]/0.548
2qmzLDPRibosyldihydronicotinamide dehydrogenase [quinone]/0.547
3gamMXXRibosyldihydronicotinamide dehydrogenase [quinone]/0.536
1xi2CB1Ribosyldihydronicotinamide dehydrogenase [quinone]/0.522
1qr2FADRibosyldihydronicotinamide dehydrogenase [quinone]/0.476
3g5mFADRibosyldihydronicotinamide dehydrogenase [quinone]/0.474
1kbo340NAD(P)H dehydrogenase [quinone] 11.6.5.20.456
4pkl1GHUncharacterized protein/0.452
4zvlFADRibosyldihydronicotinamide dehydrogenase [quinone]/0.451
4qoeFADRibosyldihydronicotinamide dehydrogenase [quinone]/0.448
1k7fIAVTryptophan synthase alpha chain/0.447
4jvmXDIEstrogen sulfotransferase2.8.2.40.446
4a312CBGlycylpeptide N-tetradecanoyltransferase/0.441