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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Binding site similarity measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Binding Sites are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299
Binding Sites are considered as similar when the similarity value is greater than 0.44

Reference Protein Data Bank Entry :
PDB IDHETUniprot NameEC Number
2w6qOA5Biotin carboxylase6.3.4.14

Complex with similar binding sites

PDB ID HET Uniprot Name EC Number Binding Site
Similarity		 Align
2w6qOA5Biotin carboxylase6.3.4.141.000
2w6mOA1Biotin carboxylase6.3.4.140.662
2w6zL21Biotin carboxylase6.3.4.140.636
2w6oOA3Biotin carboxylase6.3.4.140.558
2v5aLZLBiotin carboxylase6.3.4.140.543
2vr1ATFBiotin carboxylase6.3.4.140.539
4mv1ADPBiotin carboxylase6.3.4.140.517
2v58LZJBiotin carboxylase6.3.4.140.507
2j9gANPBiotin carboxylase6.3.4.140.502
4mv4ACPBiotin carboxylase6.3.4.140.495
2v59LZKBiotin carboxylase6.3.4.140.482
4mv8ACPBiotin carboxylase6.3.4.140.478
3jziJZLBiotin carboxylase6.3.4.140.472
2w71L23Biotin carboxylase6.3.4.140.466
4b12C23Glycylpeptide N-tetradecanoyltransferase/0.461
3h3sH15Collagen type IV alpha-3-binding protein/0.452
2w6nOA2Biotin carboxylase6.3.4.140.449
1h66FADNAD(P)H dehydrogenase [quinone] 11.6.5.20.441