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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Binding site similarity measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Binding Sites are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299
Binding Sites are considered as similar when the similarity value is greater than 0.44

Reference Protein Data Bank Entry :
PDB IDHETUniprot NameEC Number
2v58LZJBiotin carboxylase6.3.4.14

Complex with similar binding sites

PDB ID HET Uniprot Name EC Number Binding Site
Similarity		 Align
2v58LZJBiotin carboxylase6.3.4.141.000
2v5aLZLBiotin carboxylase6.3.4.140.592
2v59LZKBiotin carboxylase6.3.4.140.564
2w6pOA4Biotin carboxylase6.3.4.140.509
2w6zL21Biotin carboxylase6.3.4.140.500
2w71L23Biotin carboxylase6.3.4.140.492
2w6nOA2Biotin carboxylase6.3.4.140.490
4mv8ACPBiotin carboxylase6.3.4.140.483
2vr1ATFBiotin carboxylase6.3.4.140.478
2w6qOA5Biotin carboxylase6.3.4.140.473
2w6mOA1Biotin carboxylase6.3.4.140.466
3jzfJZKBiotin carboxylase6.3.4.140.458
4mv4ACPBiotin carboxylase6.3.4.140.458
2j9gANPBiotin carboxylase6.3.4.140.453
2w6oOA3Biotin carboxylase6.3.4.140.452
4mv1ADPBiotin carboxylase6.3.4.140.444