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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Binding site similarity measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Binding Sites are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299
Binding Sites are considered as similar when the similarity value is greater than 0.44

Reference Protein Data Bank Entry :
PDB IDHETUniprot NameEC Number
1m9hNAD2,5-diketo-D-gluconic acid reductase A1.1.1.346

Complex with similar binding sites

PDB ID HET Uniprot Name EC Number Binding Site
Similarity		 Align
1m9hNAD2,5-diketo-D-gluconic acid reductase A1.1.1.3461.000
1az2NAPAldose reductase1.1.1.210.517
1a80NDP2,5-diketo-D-gluconic acid reductase A1.1.1.3460.506
3h7rNAPAldo-keto reductase family 4 member C8/0.493
4xo7NAPAldo-keto reductase family 1 member C2/0.489
1ye4NADNAD(P)H-dependent D-xylose reductase1.1.1.3070.487
2pf8NDPAldose reductase1.1.1.210.487
1ye6NADNAD(P)H-dependent D-xylose reductase1.1.1.3070.486
1vp5NAPOxidoreductase, aldo/keto reductase family/0.482
1fdsESTEstradiol 17-beta-dehydrogenase 11.1.1.620.480
2j8tNAPAldose reductase1.1.1.210.479
4jtqNAPAldo-keto reductase family 1 member C2/0.477
3wbwNDPPutative 2,5-diketo-D-gluconic acid reductase/0.473
3i0pNADMalate dehydrogenase, putative/0.472
2y1w849Histone-arginine methyltransferase CARM1/0.471
2gv8NDPThiol-specific monooxygenase1.14.130.470
1x98NAPAldose reductase1.1.1.210.469
2pfhNDPAldose reductase1.1.1.210.469
3s5wFADL-ornithine N(5)-monooxygenase/0.468
3skgPB8Beta-secretase 13.4.23.460.468
3uzwNAP3-oxo-5-beta-steroid 4-dehydrogenase/0.468
4a312CBGlycylpeptide N-tetradecanoyltransferase/0.468
2clpNDPAflatoxin B1 aldehyde reductase member 3/0.467
4f1l0RYPoly [ADP-ribose] polymerase 142.4.2.300.467
4tnzTTPDeoxynucleoside triphosphate triphosphohydrolase SAMHD13.1.50.467
1q5mNDPProstaglandin-E(2) 9-reductase1.1.1.1890.466
2hdjNDPAldo-keto reductase family 1 member C2/0.466
2iq0NAPAldose reductase1.1.1.210.466
1qbgFADNAD(P)H dehydrogenase [quinone] 11.6.5.20.463
1ye6NAPNAD(P)H-dependent D-xylose reductase1.1.1.3070.463
2wf4ZY4Beta-secretase 13.4.23.460.461
3q67NAPAldose reductase1.1.1.210.461
1h69ARHNAD(P)H dehydrogenase [quinone] 11.6.5.20.459
1kyxCRM6,7-dimethyl-8-ribityllumazine synthase2.5.1.780.459
1pz1NAPGeneral stress protein 69/0.459
3lpkZ76Beta-secretase 13.4.23.460.458
4e2yJHZMethyltransferase/0.458
1ah4NAPAldose reductase1.1.1.210.457
3wg6NDPNADPH-dependent conjugated polyketone reductase C1/0.457
4fse0VABeta-secretase 13.4.23.460.456
1rpwDIDHTH-type transcriptional regulator QacR/0.455
2pj4414Carboxypeptidase B/0.455
4rxrDCPDeoxynucleoside triphosphate triphosphohydrolase SAMHD13.1.50.455
1adsNAPAldose reductase1.1.1.210.454
1gg5E09NAD(P)H dehydrogenase [quinone] 11.6.5.20.453
1h6cNDPGlucose--fructose oxidoreductase1.1.99.280.453
1mi3NADNAD(P)H-dependent D-xylose reductase1.1.1.3070.453
1sm9NADNAD(P)H-dependent D-xylose reductase1.1.1.3070.453
4b13X25Glycylpeptide N-tetradecanoyltransferase/0.453
4r81FMNPredicted NADH dehydrogenase/0.453
4bfzZVZPantothenate kinase2.7.1.330.452
1bk0ACVIsopenicillin N synthase1.21.3.10.451
4c2z646Glycylpeptide N-tetradecanoyltransferase 1/0.451
4rvfTYDD-mycarose 3-C-methyltransferase/0.451
2fw3BUICarnitine O-palmitoyltransferase 2, mitochondrial2.3.1.210.450
3ruaNADUDP-N-acetylglucosamine 4-epimerase/0.450
5hwoHMGHydroxymethylglutaryl-CoA synthase/0.450
1qrpHH0Pepsin A-43.4.23.10.449
3buvNAP3-oxo-5-beta-steroid 4-dehydrogenase/0.449
3bv7NAP3-oxo-5-beta-steroid 4-dehydrogenase/0.449
3h7uNAPNADPH-dependent aldo-keto reductase, chloroplastic/0.449
3zkyWT4Isopenicillin N synthase1.21.3.10.449
4rvgTYDD-mycarose 3-C-methyltransferase/0.449
1hqtNAPAlcohol dehydrogenase [NADP(+)]1.1.1.20.448
3frkTQPQdtB/0.448
3rufNADUDP-N-acetylglucosamine 4-epimerase/0.448
4cax646Glycylpeptide N-tetradecanoyltransferase2.3.1.970.448
1nqw5YL6,7-dimethyl-8-ribityllumazine synthase2.5.1.780.447
2acsNAPAldose reductase1.1.1.210.447
2wsa646Glycylpeptide N-tetradecanoyltransferase/0.447
1kyyINI6,7-dimethyl-8-ribityllumazine synthase2.5.1.780.446
1qiqACCIsopenicillin N synthase1.21.3.10.446
1rkwPNTHTH-type transcriptional regulator QacR/0.446
2yneYNEGlycylpeptide N-tetradecanoyltransferase/0.446
3nw3MU2Peptidoglycan recognition protein 1/0.446
3q43D66M1 family aminopeptidase3.4.110.446
3zoiM2WIsopenicillin N synthase1.21.3.10.446
4a30QMIGlycylpeptide N-tetradecanoyltransferase/0.446
4fsl0VBBeta-secretase 13.4.23.460.446
4rpjFADUDP-galactopyranose mutase5.4.99.90.446
3irhDTPHD domain protein/0.445
4bb3KKAIsopenicillin N synthase1.21.3.10.445
4g5dNDPProstaglandin F synthase1.1.1.1880.445
4nv10FXFormyl transferase/0.445
4y0kNAPAntE/0.445
1c9wNAPAldose reductase-related protein 2/0.444
1cf3FADGlucose oxidase1.1.3.40.444
1pr9NAPL-xylulose reductase1.1.1.100.444
2vbpVB1Isopenicillin N synthase1.21.3.10.444
1d4aFADNAD(P)H dehydrogenase [quinone] 11.6.5.20.443
1kbqFADNAD(P)H dehydrogenase [quinone] 11.6.5.20.443
1rydNDPGlucose--fructose oxidoreductase1.1.99.280.443
1sa5BMVProtein farnesyltransferase subunit beta2.5.1.580.443
3jsxCC2NAD(P)H dehydrogenase [quinone] 11.6.5.20.443
1h66FADNAD(P)H dehydrogenase [quinone] 11.6.5.20.442
1uymPU3Heat shock protein HSP 90-beta/0.442
2acqNAPAldose reductase1.1.1.210.442
2xlrFADPutative flavin-containing monooxygenase/0.442
3kybFADUDP-galactopyranose mutase5.4.99.90.442
3o4rNAPDehydrogenase/reductase SDR family member 41.1.1.1840.442
3q44D50M1 family aminopeptidase3.4.110.442
3u57DH8Raucaffricine-O-beta-D-glucosidase3.2.1.1250.442
4e32DWNMethyltransferase/0.442
4to3DCPDeoxynucleoside triphosphate triphosphohydrolase SAMHD13.1.50.442
1lwiNAP3-alpha-hydroxysteroid dehydrogenase1.1.1.500.441
1qzyTDEMethionine aminopeptidase 2/0.441
3gobHXXDdmC/0.441
3rudNADUDP-N-acetylglucosamine 4-epimerase/0.441
3u5ySCGRaucaffricine-O-beta-D-glucosidase3.2.1.1250.441
1nupNMNNicotinamide/nicotinic acid mononucleotide adenylyltransferase 3/0.440
1pz0NAPProtein IolS1.1.10.440
3o6o94MHeat shock protein 83/0.440
3rueNADUDP-N-acetylglucosamine 4-epimerase/0.440
4drjRAPSerine/threonine-protein kinase mTOR2.7.11.10.440
4drjRAPPeptidyl-prolyl cis-trans isomerase FKBP45.2.1.80.440
4rrdA3TProbable threonine--tRNA ligase 26.1.1.30.440