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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Binding site similarity measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Binding Sites are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299
Binding Sites are considered as similar when the similarity value is greater than 0.44

Reference Protein Data Bank Entry :
PDB IDHETUniprot NameEC Number
1gjrFADFerredoxin--NADP reductase1.18.1.2

Complex with similar binding sites

PDB ID HET Uniprot Name EC Number Binding Site
Similarity		 Align
1gjrFADFerredoxin--NADP reductase1.18.1.21.000
3zc3FADFerredoxin--NADP reductase1.18.1.20.654
4c43FADFerredoxin--NADP reductase1.18.1.20.628
4bprFADFerredoxin--NADP reductase1.18.1.20.625
1fnbFADFerredoxin--NADP reductase, chloroplastic1.18.1.20.622
1bx1FADFerredoxin--NADP reductase, chloroplastic1.18.1.20.621
1w35FADFerredoxin--NADP reductase1.18.1.20.615
2rc6FADFerredoxin--NADP reductase/0.614
1gawFADFerredoxin/0.611
1qgyFADFerredoxin--NADP reductase1.18.1.20.610
1gaqFADFerredoxin/0.607
1h85FADFerredoxin--NADP reductase1.18.1.20.607
4af7FADFerredoxin--NADP reductase, leaf isozyme, chloroplastic1.18.1.20.607
3vo2FADFerredoxin--NADP reductase/0.604
1fncFDAFerredoxin--NADP reductase, chloroplastic1.18.1.20.603
4af6FADFerredoxin--NADP reductase, leaf isozyme, chloroplastic1.18.1.20.601
1sm4FADFerredoxin--NADP reductase/0.595
1queFADFerredoxin--NADP reductase1.18.1.20.594
2b5oFADFerredoxin--NADP reductase1.18.1.20.591
1fndFADFerredoxin--NADP reductase, chloroplastic1.18.1.20.587
1w87FADFerredoxin--NADP reductase1.18.1.20.584
1h42FADFerredoxin--NADP reductase1.18.1.20.583
1e63FADFerredoxin--NADP reductase1.18.1.20.582
1bjkFADFerredoxin--NADP reductase1.18.1.20.580
3w5uFADFerredoxin/0.580
1qh0FADFerredoxin--NADP reductase1.18.1.20.579
3mhpFADFerredoxin--NADP reductase, leaf isozyme, chloroplastic1.18.1.20.576
1go2FADFerredoxin--NADP reductase1.18.1.20.571
1ewyFADFerredoxin--NADP reductase1.18.1.20.566
3fpkFADFerredoxin-NADP reductase/0.564
1e64FADFerredoxin--NADP reductase1.18.1.20.562
1ogjFADFerredoxin--NADP reductase1.18.1.20.560
3zbtFADFerredoxin--NADP reductase1.18.1.20.556
1qgzFADFerredoxin--NADP reductase1.18.1.20.554
1e62FADFerredoxin--NADP reductase1.18.1.20.553
1ogiFADFerredoxin--NADP reductase1.18.1.20.545
1bx0FADFerredoxin--NADP reductase, chloroplastic1.18.1.20.540
2ok8FADFerredoxin--NADP reductase, apicoplast/0.534
1b2rFADFerredoxin--NADP reductase1.18.1.20.531
2xncFADFerredoxin--NADP reductase, leaf isozyme, chloroplastic1.18.1.20.528
1gr1FADFerredoxin--NADP reductase1.18.1.20.527
3qfsFADNADPH--cytochrome P450 reductase/0.523
3qe2FADNADPH--cytochrome P450 reductase/0.519
2rc5FADFerredoxin--NADP reductase/0.518
1amoFADNADPH--cytochrome P450 reductase/0.514
3qfcFADNADPH--cytochrome P450 reductase/0.514
1ja1FADNADPH--cytochrome P450 reductase/0.504
3jqrFADFerredoxin--NADP reductase, apicoplast/0.501
4y9uFADNADPH--cytochrome P450 reductase/0.501
4y7cFADNADPH--cytochrome P450 reductase/0.498
1f20FADNitric oxide synthase, brain1.14.13.390.496
4yafFADNADPH--cytochrome P450 reductase/0.495
2wsa646Glycylpeptide N-tetradecanoyltransferase/0.492
4a322CDGlycylpeptide N-tetradecanoyltransferase/0.492
1j9zFADNADPH--cytochrome P450 reductase/0.491
3ojxFADNADPH--cytochrome P450 reductase/0.489
4c2z646Glycylpeptide N-tetradecanoyltransferase 1/0.487
1tllFADNitric oxide synthase, brain1.14.13.390.484
4y9rFADNADPH--cytochrome P450 reductase/0.484
4yaoFADNADPH--cytochrome P450 reductase/0.483
4uajFADNa(+)-translocating NADH-quinone reductase subunit F/0.482
3qftFADNADPH--cytochrome P450 reductase/0.481
4cax646Glycylpeptide N-tetradecanoyltransferase2.3.1.970.481
1gvhFADFlavohemoprotein/0.476
1ja1FMNNADPH--cytochrome P450 reductase/0.475
2bpoFADNADPH--cytochrome P450 reductase/0.475
4a30QMIGlycylpeptide N-tetradecanoyltransferase/0.474
1x1dSAHC-20 methyltransferase/0.473
4q0kGA3Phytohormone-binding protein/0.473
4b13X25Glycylpeptide N-tetradecanoyltransferase/0.472
4esoNAPPutative oxidoreductase/0.471
5a4vQUEGlutathione S-transferase F22.5.1.180.468
1uhoVDNcGMP-specific 3',5'-cyclic phosphodiesterase/0.467
3qfrFMNNADPH--cytochrome P450 reductase/0.467
4b12C23Glycylpeptide N-tetradecanoyltransferase/0.467
1a8pFADFerredoxin--NADP reductase/0.466
2ewmNAD(S)-1-Phenylethanol dehydrogenase1.1.1.3110.466
4a312CBGlycylpeptide N-tetradecanoyltransferase/0.466
3c49KU8Poly [ADP-ribose] polymerase 32.4.2.300.464
2r6hFADNa(+)-translocating NADH-quinone reductase subunit F/0.463
1cqxFADFlavohemoprotein/0.462
1x1bSAHC-20 methyltransferase/0.462
2vnjFADNADPH:ferredoxin reductase/0.462
4a2zVIQGlycylpeptide N-tetradecanoyltransferase/0.462
2geuCOKPantothenate kinase2.7.1.330.461
1krhFADBenzoate 1,2-dioxygenase electron transfer component1.18.1.30.460
1q0zAKAAclacinomycin methylesterase RdmC3.1.1.950.460
3ojxFMNNADPH--cytochrome P450 reductase/0.459
2vnkFADNADPH:ferredoxin reductase/0.458
1i5rHYCEstradiol 17-beta-dehydrogenase 11.1.1.620.457
2vf3GVS4-diphosphocytidyl-2-C-methyl-D-erythritol kinase/0.457
3dynPCGHigh affinity cGMP-specific 3',5'-cyclic phosphodiesterase 9A/0.457
3br3ETHTH-type transcriptional regulator QacR/0.456
1fdrFADFerredoxin--NADP reductase1.18.1.20.455
1g63FMNEpidermin decarboxylase4.1.10.454
4b78KGGBeta-secretase 13.4.23.460.454
1e66HUXAcetylcholinesterase3.1.1.70.453
1udtVIAcGMP-specific 3',5'-cyclic phosphodiesterase/0.453
3h3t16HCollagen type IV alpha-3-binding protein/0.453
4h1e10JBeta-secretase 13.4.23.460.453
5c6cCMPcGMP-dependent protein kinase 22.7.11.120.453
3qe2FMNNADPH--cytochrome P450 reductase/0.452
1ptjNAPNAD(P) transhydrogenase subunit beta1.6.1.20.451
1q0rAKTAclacinomycin methylesterase RdmC3.1.1.950.451
3g4iD71cAMP-specific 3',5'-cyclic phosphodiesterase 4D3.1.4.530.451
3gwfFADCyclohexanone monooxygenase/0.451
4fk8FADFerredoxin--NADP reductase/0.451
1tcoFK5Peptidyl-prolyl cis-trans isomerase FKBP1A5.2.1.80.450
1tcoFK5Serine/threonine-protein phosphatase 2B catalytic subunit alpha isoform3.1.3.160.450
2bf4FADNADPH--cytochrome P450 reductase/0.450
2bgiFADNADPH:ferredoxin reductase/0.450
2bgjFADNADPH:ferredoxin reductase/0.450
3h3r14HCollagen type IV alpha-3-binding protein/0.450
1nm5NAPNAD(P) transhydrogenase subunit beta1.6.1.20.449
3dyqIBMHigh affinity cGMP-specific 3',5'-cyclic phosphodiesterase 9A/0.449
1w76GNTAcetylcholinesterase3.1.1.70.447
2piaFMNPhthalate dioxygenase reductase/0.447
4g2l0WLHigh affinity cGMP-specific 3',5'-cyclic phosphodiesterase 9A/0.447
2fgkATPAlpha-hemolysin translocation ATP-binding protein HlyB/0.446
3af1GDPPantothenate kinase2.7.1.330.446
1s9dAFBCytohesin-2/0.445
1s9dAFBADP-ribosylation factor 1/0.445
2a58RBF6,7-dimethyl-8-ribityllumazine synthase2.5.1.780.445
2c1zKMPAnthocyanidin 3-O-glucosyltransferase 22.4.1.1150.445
3busSAHDemethylrebeccamycin-D-glucose O-methyltransferase/0.445
3g4kROLcAMP-specific 3',5'-cyclic phosphodiesterase 4D3.1.4.530.445
4b117I1Glycylpeptide N-tetradecanoyltransferase/0.445
4bfuZVUPantothenate kinase2.7.1.330.445
4yauFADNADPH--cytochrome P450 reductase/0.445
1icpFMN12-oxophytodienoate reductase 11.3.1.420.444
1mrqSTRAldo-keto reductase family 1 member C1/0.444
1pqc444Oxysterols receptor LXR-beta/0.444
1xoqROFcAMP-specific 3',5'-cyclic phosphodiesterase 4D3.1.4.530.444
1xorZARcAMP-specific 3',5'-cyclic phosphodiesterase 4D3.1.4.530.444
2vnhFADNADPH:ferredoxin reductase/0.444
3rsv3RSBeta-secretase 13.4.23.460.444
3v94WYQPhosphodiesterase/0.444
4f1l0RYPoly [ADP-ribose] polymerase 142.4.2.300.444
1iolESTEstradiol 17-beta-dehydrogenase 11.1.1.620.443
2e0nSAHPrecorrin-2 C20-methyltransferase/0.443
2g247IGRenin3.4.23.150.443
3af0GDPPantothenate kinase2.7.1.330.443
3q9bB3NAcetylpolyamine amidohydrolase/0.443
4e2yJHZMethyltransferase/0.443
6ctsCICCitrate synthase, mitochondrial2.3.3.10.443
1kyvRBF6,7-dimethyl-8-ribityllumazine synthase2.5.1.780.442
1qzyTDEMethionine aminopeptidase 2/0.442
3jswJARHigh affinity cGMP-specific 3',5'-cyclic phosphodiesterase 9A/0.442
3w6hAZMCarbonic anhydrase 14.2.1.10.442
4a959MTGlycylpeptide N-tetradecanoyltransferase/0.442
4c13UMLUDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase/0.442
1y5xE89Queuine tRNA-ribosyltransferase2.4.2.290.441
2w6zL21Biotin carboxylase6.3.4.140.441
3dy85GPHigh affinity cGMP-specific 3',5'-cyclic phosphodiesterase 9A/0.441
4bfxZVXPantothenate kinase2.7.1.330.441
4fse0VABeta-secretase 13.4.23.460.441
4jlm1NNDeoxycytidine kinase2.7.1.740.441
1hzzNAPNAD(P) transhydrogenase subunit beta1.6.1.20.440
1vbiNADMalate/L-lactate dehydrogenase family protein/0.440
1zx1CB1Ribosyldihydronicotinamide dehydrogenase [quinone]/0.440
2fw3BUICarnitine O-palmitoyltransferase 2, mitochondrial2.3.1.210.440
3fktSIIBeta-secretase 13.4.23.460.440
4bb3KKAIsopenicillin N synthase1.21.3.10.440