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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
4yus FMN Family 3 adenylate cyclase

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
4yus FMNFamily 3 adenylate cyclase / 1.004
1x0p FADTll0078 protein / 0.785
2iyg FMNAppA, antirepressor of ppsR, sensor of blue light / 0.784
3gg1 FMNUncharacterized protein / 0.756
3gfz FMNUncharacterized protein / 0.752
3gfy FMNUncharacterized protein / 0.743
2iyi FMNAppA, antirepressor of ppsR, sensor of blue light / 0.742
4wuj FMNGlycoside hydrolase family 15, cellulose signaling associated protein envoy / 0.731
2hfo FMNActivator of photopigment and puc expression / 0.730
2pd8 FADVivid PAS protein VVD / 0.728
3gfx FMNUncharacterized protein / 0.724
4hia FMNLOV protein / 0.724
4hj4 FMNLOV protein / 0.723
5j4e FMNSensory box protein / 0.713
3hji FADVivid PAS protein VVD / 0.712
3hjk FADVivid PAS protein VVD / 0.709
2z6d FMNPhototropin-2 2.7.11.1 0.707
1n9n FMNPutative blue light receptor / 0.703
3d72 FADVivid PAS protein VVD / 0.703
4hh0 FMNAppA protein / 0.700
2hfn FMNActivator of photopigment and puc expression / 0.697
2pr5 FMNBlue-light photoreceptor / 0.697
4eet FMNPhototropin-2 2.7.11.1 0.697
3clt FADElectron transfer flavoprotein subunit alpha / 0.694
4hnb FMNLOV protein / 0.693
2pdt FADVivid PAS protein VVD / 0.692
4kuo RBFPutative blue-light photoreceptor / 0.692
3ad9 FADSubunit beta of sarcosine oxidase / 0.691
4wf0 FMNNPH1-1 / 0.691
3ue6 FMNAureochrome1 / 0.690
4eep FMNPhototropin-2 2.7.11.1 0.688
4hhd FMNPhototropin-1 2.7.11.1 0.685
4r38 RBFBlue-light-activated histidine kinase 2 2.7.13.3 0.684
3clr FADElectron transfer flavoprotein subunit alpha / 0.683
3gg0 FMNUncharacterized protein / 0.683
1efp FADElectron transfer flavoprotein subunit alpha / 0.681
1yrx FMNAppA protein / 0.681
5j3w FMNSensory box protein / 0.680
1ps9 FAD2,4-dienoyl-CoA reductase 1.3.1.34 0.679
4opg FDAConserved Archaeal protein / 0.679
1r2j FADFkbI / 0.676
2a1u FADElectron transfer flavoprotein subunit alpha, mitochondrial / 0.676
2dvl FADAcyl-CoA dehydrogenase / 0.676
4irn FADAnaB / 0.676
4m5p FMNNADPH dehydrogenase / 0.676
1h51 FMNPentaerythritol tetranitrate reductase / 0.675
2gh5 FADGlutathione reductase, mitochondrial 1.8.1.7 0.675
3clu FADElectron transfer flavoprotein subunit alpha / 0.675
3p62 FMNPentaerythritol tetranitrate reductase / 0.674
3p67 FMNPentaerythritol tetranitrate reductase / 0.674
3p8i FMNPentaerythritol tetranitrate reductase / 0.674
1jeh FADDihydrolipoyl dehydrogenase, mitochondrial 1.8.1.4 0.673
3p84 FMNPentaerythritol tetranitrate reductase / 0.673
4jq9 FADDihydrolipoyl dehydrogenase / 0.673
3pfd FDAAcyl-CoA dehydrogenase FadE25 / 0.672
4udq FAD5-(hydroxymethyl)furfural oxidase / 0.672
5ahk FADAcetolactate synthase II, large subunit / 0.672
4eo3 FMNBacterioferritin comigratory protein/NADH dehydrogenase / 0.671
5af7 FADAcyl-CoA dehydrogenase / 0.671
3mpi FADGlutaryl-CoA dehydrogenase 1.3.99.32 0.670
4c3x FAD3-ketosteroid dehydrogenase / 0.669
4udr FAD5-(hydroxymethyl)furfural oxidase / 0.669
4kuk RBFPutative blue-light photoreceptor / 0.668
4m52 FADDihydrolipoyl dehydrogenase 1.8.1.4 0.668
1xpq FADPolyamine oxidase FMS1 / 0.667
2c3d FAD2-oxopropyl-CoM reductase, carboxylating 1.8.1.5 0.665
3ean FADThioredoxin reductase 1, cytoplasmic 1.8.1.9 0.665
5hxw FADL-amino acid deaminase / 0.664
1efv FADElectron transfer flavoprotein subunit alpha, mitochondrial / 0.663
2gr3 FADFerredoxin reductase / 0.663
4b5n FMNNAD(P)H:flavin oxidoreductase Sye4 / 0.663
1h63 FMNPentaerythritol tetranitrate reductase / 0.661
3nf4 FADAcyl-CoA dehydrogenase domain-containing protein / 0.661
3nyc FADFAD-dependent catabolic D-arginine dehydrogenase DauA / 0.661
4nev FADTrypanothione reductase / 0.661
1h50 FMNPentaerythritol tetranitrate reductase / 0.660
1vyr FMNPentaerythritol tetranitrate reductase / 0.660
2abb FMNPentaerythritol tetranitrate reductase / 0.660
2vyx FMNDodecin / 0.660
3f03 FMNPentaerythritol tetranitrate reductase / 0.660
3p8j FMNPentaerythritol tetranitrate reductase / 0.660
4opi FDAConserved Archaeal protein / 0.660
2e48 FADD-amino-acid oxidase 1.4.3.3 0.659
2jbs FMNp-hydroxyphenylacetate 3-hydroxylase, oxygenase component / 0.659
3p74 FMNPentaerythritol tetranitrate reductase / 0.658
4qai FMNNADPH dehydrogenase / 0.658
1vji FMN12-oxophytodienoate reductase 1 1.3.1.42 0.657
2hsa FMN12-oxophytodienoate reductase 3 1.3.1.42 0.657
2v1a FMNNPH1-1 / 0.657
2z6i FMN2-nitropropane dioxygenase / 0.657
3cls FADElectron transfer flavoprotein subunit alpha / 0.657
2fmo FAD5,10-methylenetetrahydrofolate reductase 1.5.1.20 0.656
1f8r FADL-amino-acid oxidase 1.4.3.2 0.655
2e1m FADL-glutamate oxidase / 0.655
2jk6 FADTrypanothione reductase / 0.655
3c3n FMNDihydroorotate dehydrogenase (fumarate) 1.3.98.1 0.655
3gka FMNN-ethylmaleimide reductase / 0.655
4aws FMNNADH:flavin oxidoreductase Sye1 / 0.655
5l3d FADLysine-specific histone demethylase 1A 1 0.655
1b4v FADCholesterol oxidase 1.1.3.6 0.654
2qae FADDihydrolipoyl dehydrogenase 1.8.1.4 0.654
2iid FADL-amino-acid oxidase 1.4.3.2 0.653
3gmb FAD2-methyl-3-hydroxypyridine-5-carboxylic acid oxygenase / 0.653
4rnw FMNNADPH dehydrogenase 1 1.6.99.1 0.653
1f8s FADL-amino-acid oxidase 1.4.3.2 0.652
1owl FADDeoxyribodipyrimidine photo-lyase 4.1.99.3 0.652
1xdi FADNAD(P)H dehydrogenase (quinone) / 0.651
3axb FADPutative oxidoreductase / 0.651
3dk4 FADGlutathione reductase, mitochondrial 1.8.1.7 0.651
3dk8 FADGlutathione reductase, mitochondrial 1.8.1.7 0.651
4d7e FADPutative lysine-N-oxygenase / 0.651
4jdr FADDihydrolipoyl dehydrogenase 1.8.1.4 0.651
4wzh FMNDihydroorotate dehydrogenase (fumarate) / 0.651
1nb9 RBFRiboflavin kinase 2.7.1.26 0.650
3djj FADGlutathione reductase, mitochondrial 1.8.1.7 0.650
3dk9 FADGlutathione reductase, mitochondrial 1.8.1.7 0.650