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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
4l16 ADP Fidgetin-like protein 1 3.6.4

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
4l16 ADPFidgetin-like protein 1 3.6.4 0.835
3nbx ADPATPase RavA 3.6.3 0.719
3fmo ADPATP-dependent RNA helicase DDX19B 3.6.4.13 0.708
1e32 ADPTransitional endoplasmic reticulum ATPase 3.6.4.6 0.704
3k1j ADPATP-dependent protease Lon / 0.697
3oeh ANPATP synthase subunit alpha, mitochondrial / 0.695
1in5 ADPHolliday junction ATP-dependent DNA helicase RuvB / 0.690
5fl3 ADPPili retraction protein PilT / 0.687
1a2b GSPTransforming protein RhoA / 0.685
1gil GSPGuanine nucleotide-binding protein G(i) subunit alpha-1 / 0.682
2fgj ATPAlpha-hemolysin translocation ATP-binding protein HlyB / 0.680
4ww4 ADPRuvB-like helicase / 0.680
2osb AP5Adenylate kinase / 0.678
1h65 GDPTranslocase of chloroplast 34 3.6.5 0.676
2pg2 ADPKinesin-like protein KIF11 / 0.675
2x7e ADPKinesin-like protein KIF11 / 0.675
1w0k ADPATP synthase subunit alpha, mitochondrial / 0.674
1w0k ADPATP synthase subunit beta, mitochondrial 3.6.3.14 0.674
2r9v ATPATP synthase subunit alpha / 0.674
2zpa ADPtRNA(Met) cytidine acetyltransferase TmcA / 0.673
2c9c ATPPsp operon transcriptional activator / 0.672
2cea ADPATP-dependent zinc metalloprotease FtsH / 0.670
4mkf AP5Adenylate kinase / 0.670
4qnr ATPPsp operon transcriptional activator / 0.670
3bb3 GDPTranslocase of chloroplast 33, chloroplastic 3.6.5 0.668
4gzm GSPRas-related C3 botulinum toxin substrate 1 / 0.667
1mab ATPATP synthase subunit alpha, mitochondrial / 0.666
4d81 ADPAAA ATPase, central domain protein / 0.665
2gvd GSPGuanine nucleotide-binding protein G(s) subunit alpha isoforms short / 0.664
5c46 GSPRas-related protein Rab-11A / 0.664
1s3s ADPTransitional endoplasmic reticulum ATPase 3.6.4.6 0.663
4z54 GDPNeuronal-specific septin-3 / 0.663
3d8b ADPFidgetin-like protein 1 3.6.4 0.662
4pao GSPGuanine nucleotide-binding protein G(i) subunit alpha-1 / 0.662
2nmv ADPUvrABC system protein B / 0.661
2rgx AP5Adenylate kinase / 0.661
3uk6 ADPRuvB-like 2 3.6.4.12 0.661
4kln AGSTransitional endoplasmic reticulum ATPase 3.6.4.6 0.661
4o2l GTPGTP-binding protein Rheb / 0.661
1im2 ADPATP-dependent protease ATPase subunit HslU / 0.659
2x2r ADPKinesin-like protein KIF11 / 0.659
3sqx ANPATP-dependent RNA helicase MSS116, mitochondrial 3.6.4.13 0.659
1xef ATPAlpha-hemolysin translocation ATP-binding protein HlyB / 0.658
2olr ATPPhosphoenolpyruvate carboxykinase (ATP) / 0.658
2uyi ADPKinesin-like protein KIF11 / 0.658
2vf7 ADPUvrABC system protein A / 0.658
1gwn GTPRho-related GTP-binding protein RhoE / 0.656
4tlc AGSCircadian clock protein kinase KaiC 2.7.11.1 0.656
4ymu ATPABC-type polar amino acid transport system, ATPase component / 0.655
1u0h GSPGuanine nucleotide-binding protein G(s) subunit alpha isoforms short / 0.653
3kz1 GSPTransforming protein RhoA / 0.653
1cul GSPGuanine nucleotide-binding protein G(s) subunit alpha isoforms short / 0.652
2c9o ADPRuvB-like 1 3.6.4.12 0.652
1fmw ATPMyosin-2 heavy chain / 0.651
2olq ATPPhosphoenolpyruvate carboxykinase (ATP) / 0.651
2v7q ATPATP synthase subunit alpha, mitochondrial / 0.651
2v7q ATPATP synthase subunit beta, mitochondrial 3.6.3.14 0.651
3bos CDPRegulatory inactivation of DnaA Hda protein / 0.651
3cf0 ADPTransitional endoplasmic reticulum ATPase 3.6.4.6 0.651
3l9h ADPKinesin-like protein KIF11 / 0.650
3wyf GTPGTP-binding nuclear protein / 0.650
3zia ADPATP synthase subunit beta, mitochondrial 3.6.3.14 0.650