2.800 Å
X-ray
2013-06-02
Name: | Fidgetin-like protein 1 |
---|---|
ID: | FIGL1_CAEEL |
AC: | O16299 |
Organism: | Caenorhabditis elegans |
Reign: | Eukaryota |
TaxID: | 6239 |
EC Number: | 3.6.4 |
Chain Name: | Percentage of Residues within binding site |
---|---|
A | 100 % |
B-Factor: | 66.617 |
---|---|
Number of residues: | 33 |
Including | |
Standard Amino Acids: | 33 |
Non Standard Amino Acids: | 0 |
Water Molecules: | 0 |
Cofactors: | |
Metals: |
Ligandability | Volume (Å3) |
---|---|
0.233 | 300.375 |
% Hydrophobic | % Polar |
---|---|
44.94 | 55.06 |
According to VolSite |
HET Code: | ADP |
---|---|
Formula: | C10H12N5O10P2 |
Molecular weight: | 424.177 g/mol |
DrugBank ID: | - |
Buried Surface Area: | 53.38 % |
Polar Surface area: | 260.7 Å2 |
Number of | |
---|---|
H-Bond Acceptors: | 14 |
H-Bond Donors: | 3 |
Rings: | 3 |
Aromatic rings: | 2 |
Anionic atoms: | 3 |
Cationic atoms: | 0 |
Rule of Five Violation: | 1 |
Rotatable Bonds: | 6 |
X | Y | Z |
---|---|---|
3.26633 | 38.8959 | 2.40515 |
Represent the protein/ligand binding mode, centered on the ligand
Dashed lines represents hydrogen bonds and metal interactions
Green residue labels for amino acids with hydrophobic contacts (green lines) to the ligand
Ligand | Protein | Interaction | |||
---|---|---|---|---|---|
Atom | Atom | Residue | Distance (Å) | Angle (°) | Type |
N6 | O | ALA- 319 | 2.99 | 129.32 | H-Bond (Ligand Donor) |
O3B | N | GLY- 359 | 3 | 150.68 | H-Bond (Protein Donor) |
O2B | N | THR- 360 | 3.06 | 147.6 | H-Bond (Protein Donor) |
O3A | N | GLY- 361 | 2.68 | 128.01 | H-Bond (Protein Donor) |
O5' | N | GLY- 361 | 3.5 | 133.92 | H-Bond (Protein Donor) |
O2B | NZ | LYS- 362 | 3.14 | 139.44 | H-Bond (Protein Donor) |
O2B | N | LYS- 362 | 3.19 | 159.5 | H-Bond (Protein Donor) |
O3A | N | LYS- 362 | 3.2 | 131.78 | H-Bond (Protein Donor) |
O2B | NZ | LYS- 362 | 3.14 | 0 | Ionic (Protein Cationic) |
O1B | N | THR- 363 | 3.09 | 152.06 | H-Bond (Protein Donor) |
C4' | CB | ALA- 521 | 4.15 | 0 | Hydrophobic |