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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
4h4q FAD Biphenyl dioxygenase ferredoxin reductase subunit

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
4h4q FADBiphenyl dioxygenase ferredoxin reductase subunit / 1.415
4h4w FADBiphenyl dioxygenase ferredoxin reductase subunit / 1.374
4h4u FADBiphenyl dioxygenase ferredoxin reductase subunit / 1.370
4h4y FADBiphenyl dioxygenase ferredoxin reductase subunit / 1.357
4h4s FADBiphenyl dioxygenase ferredoxin reductase subunit / 1.356
2gr1 FADFerredoxin reductase / 1.355
2yvf FADFerredoxin reductase / 1.354
4h50 FADBiphenyl dioxygenase ferredoxin reductase subunit / 1.294
4h4z FADBiphenyl dioxygenase ferredoxin reductase subunit / 1.119
4h4x FADBiphenyl dioxygenase ferredoxin reductase subunit / 1.117
4h4r FADBiphenyl dioxygenase ferredoxin reductase subunit / 1.103
4h4t FADBiphenyl dioxygenase ferredoxin reductase subunit / 1.099
2gr3 FADFerredoxin reductase / 1.092
4h4p FADBiphenyl dioxygenase ferredoxin reductase subunit / 1.087
2gqw FADFerredoxin reductase / 1.084
4h4v FADBiphenyl dioxygenase ferredoxin reductase subunit / 1.083
2gr0 FADFerredoxin reductase / 1.069
1d7y FADFerredoxin reductase / 1.068
1f3p FADFerredoxin reductase / 1.052
1q1r FADPutidaredoxin reductase 1.18.1.5 0.918
2yvj FADFerredoxin reductase / 0.906
5fs9 FADApoptosis-inducing factor 1, mitochondrial 1.1.1 0.867
4lii FADApoptosis-inducing factor 1, mitochondrial 1.1.1 0.839
1m6i FADApoptosis-inducing factor 1, mitochondrial 1.1.1 0.838
1q1w FADPutidaredoxin reductase 1.18.1.5 0.830
3klj FADNADH-rubredoxin oxidoreductase 1.18.1.1 0.826
3lb8 FADPutidaredoxin reductase 1.18.1.5 0.820
5fs7 FADApoptosis-inducing factor 1, mitochondrial 1.1.1 0.819
4bur FADApoptosis-inducing factor 1, mitochondrial 1.1.1 0.803
4bv6 FADApoptosis-inducing factor 1, mitochondrial 1.1.1 0.798
1gv4 FADApoptosis-inducing factor 1, mitochondrial 1.1.1 0.795
3ef6 FADToluene 1,2-dioxygenase system ferredoxin--NAD(+) reductase component 1.18.1.3 0.778
5fs6 FADApoptosis-inducing factor 1, mitochondrial 1.1.1 0.758
4ocg FADFAD-dependent pyridine nucleotide-disulphide oxidoreductase / 0.751
1rsg FADPolyamine oxidase FMS1 / 0.748
1h83 FADPolyamine oxidase 1.5.3.14 0.737
2v3a FADRubredoxin-NAD(+) reductase 1.18.1.1 0.731
3cnt FADPolyamine oxidase FMS1 / 0.724
3f8r NAPNADH oxidase/thioredoxin reductase / 0.724
2bry FAD[F-actin]-methionine sulfoxide oxidase MICAL1 1.14.13 0.722
2bra FAD[F-actin]-methionine sulfoxide oxidase MICAL1 1.14.13 0.719
3nta FADFAD-dependent pyridine nucleotide-disulphide oxidoreductase / 0.716
1d4c FADFumarate reductase flavoprotein subunit 1.3.5.4 0.713
2tmd ADPTrimethylamine dehydrogenase 1.5.8.2 0.713
3kpf FADPolyamine oxidase 1.5.3.14 0.713
2cdu FADNADH oxidase / 0.712
4xbf FADLysine-specific histone demethylase 1A 1 0.711
4em4 FADCoenzyme A disulfide reductase / 0.710
3bi5 FADPolyamine oxidase FMS1 / 0.706
3t37 FADPyridoxine 4-oxidase / 0.705
2uxx FAJLysine-specific histone demethylase 1A 1 0.704
3ntd FADFAD-dependent pyridine nucleotide-disulphide oxidoreductase / 0.704
3cgb FADCoenzyme A disulfide reductase / 0.702
2dw4 FADLysine-specific histone demethylase 1A 1 0.697
3cgc FADCoenzyme A disulfide reductase / 0.697
3f8d FADNADH oxidase/thioredoxin reductase / 0.696
3gd3 FADApoptosis-inducing factor 1, mitochondrial 1.1.1 0.696
4guu FA9Lysine-specific histone demethylase 1B 1 0.696
3cge FADCoenzyme A disulfide reductase / 0.695
3ish FADThioredoxin reductase 1.8.1.9 0.695
5fs8 FADApoptosis-inducing factor 1, mitochondrial 1.1.1 0.692
5l3d FADLysine-specific histone demethylase 1A 1 0.692
2q0k FADThioredoxin reductase 1.8.1.9 0.690
4wx1 FDAUDP-galactopyranose mutase / 0.690
1o94 ADPTrimethylamine dehydrogenase 1.5.8.2 0.688
3r9u FADThioredoxin reductase / 0.687
3rha FDAPutrescine oxidase / 0.687
3gdp FAD(R)-mandelonitrile lyase 2 4.1.2.10 0.685
1djq ADPTrimethylamine dehydrogenase 1.5.8.2 0.684
3k30 ADPHistamine dehydrogenase / 0.684
3k7t FAD6-hydroxy-L-nicotine oxidase / 0.684
3qj4 FADRenalase / 0.683
3kkj FADRenalase / 0.681
3sgl FADtRNA 5-methylaminomethyl-2-thiouridine biosynthesis bifunctional protein MnmC / 0.680
3uth FDAUDP-galactopyranose mutase / 0.679
1z6l FADPolyamine oxidase FMS1 / 0.678
4em3 FADCoenzyme A disulfide reductase / 0.678
4u8o FDAUDP-galactopyranose mutase / 0.678
1yy5 FADPolyamine oxidase FMS1 / 0.675
4j33 FADKynurenine 3-monooxygenase / 0.675
3ics FADCoenzyme A disulfide reductase / 0.674
2fje FADAdenylylsulfate reductase, subunit A (AprA) / 0.673
4eqx FADCoenzyme A disulfide reductase / 0.673
2jae FADL-amino acid oxidase / 0.672
4la1 FADThioredoxin glutathione reductase / 0.672
4gus FADLysine-specific histone demethylase 1B 1 0.670
1djn ADPTrimethylamine dehydrogenase 1.5.8.2 0.669
1ju2 FAD(R)-mandelonitrile lyase 2 4.1.2.10 0.669
2eq6 FADDihydrolipoyl dehydrogenase / 0.669
2eq8 FADDihydrolipoyl dehydrogenase / 0.669
1grb FADGlutathione reductase, mitochondrial 1.8.1.7 0.668
3fg2 FADPutative rubredoxin reductase / 0.667
3kpk FADSulfide-quinone reductase / 0.667
4emw FADCoenzyme A disulfide reductase / 0.667
1mo9 FAD2-oxopropyl-CoM reductase, carboxylating 1.8.1.5 0.666
2c3c FAD2-oxopropyl-CoM reductase, carboxylating 1.8.1.5 0.666
5er0 FADUncharacterized NAD(FAD)-dependent dehydrogenase / 0.666
5g3s FDAFlavin-dependent L-tryptophan oxidase VioA / 0.666
1y56 ATPUncharacterized protein / 0.665
3utg FDAUDP-galactopyranose mutase / 0.664
4emj FADToluene 1,2-dioxygenase system ferredoxin--NAD(+) reductase component 1.18.1.3 0.664
2jb1 FADL-amino acid oxidase / 0.663
4jn9 FADDepH / 0.663
1b4v FADCholesterol oxidase 1.1.3.6 0.662
1h81 FADPolyamine oxidase 1.5.3.14 0.662
2jb2 FADL-amino acid oxidase / 0.662
2x8h FADThioredoxin glutathione reductase / 0.662
3ab1 FADFerredoxin--NADP reductase 1.18.1.2 0.662
3cgd FADCoenzyme A disulfide reductase / 0.662
4gdp FADPolyamine oxidase FMS1 / 0.662
4u8n FDAUDP-galactopyranose mutase / 0.661
3uov FAD2-oxo-Delta(3)-4,5,5-trimethylcyclopentenylacetyl-CoA monooxygenase 1.14.13.160 0.660
2aqj FADFlavin-dependent tryptophan halogenase PrnA 1.14.19.9 0.658
2f5z FADDihydrolipoyl dehydrogenase, mitochondrial 1.8.1.4 0.658
2iw5 FADLysine-specific histone demethylase 1A 1 0.658
4fwj FADLysine-specific histone demethylase 1B 1 0.658
2fjd SFDAdenylylsulfate reductase, subunit A (AprA) / 0.657
2whd FADThioredoxin reductase / 0.657
3icr FADCoenzyme A disulfide reductase / 0.657
3djj FADGlutathione reductase, mitochondrial 1.8.1.7 0.656
3ukf FDAUDP-galactopyranose mutase / 0.656
1jnr FADAdenylylsulfate reductase, subunit A (AprA) / 0.654
2iyg FMNAppA, antirepressor of ppsR, sensor of blue light / 0.654
2q7v FADThioredoxin reductase / 0.654
3lad FADDihydrolipoyl dehydrogenase / 0.654
4bc7 FADAlkyldihydroxyacetonephosphate synthase, peroxisomal 2.5.1.26 0.654
4up3 FADThioredoxin reductase / 0.654
1f8w FADNADH peroxidase 1.11.1.1 0.653
3ihg FADAklavinone 12-hydroxylase RdmE / 0.653
3lxd FADFAD-dependent pyridine nucleotide-disulfide oxidoreductase / 0.653
3nt6 FADFAD-dependent pyridine nucleotide-disulphide oxidoreductase / 0.653
5i39 FADL-amino acid deaminase / 0.653
1cl0 FADThioredoxin reductase 1.8.1.9 0.652
4ccq FADThioredoxin reductase / 0.652
1e1l FADNADPH:adrenodoxin oxidoreductase, mitochondrial 1.18.1.6 0.651
1gra FADGlutathione reductase, mitochondrial 1.8.1.7 0.651
2npx FADNADH peroxidase 1.11.1.1 0.651
1dnc FADGlutathione reductase, mitochondrial 1.8.1.7 0.650
2yg3 FADPutrescine oxidase / 0.650