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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
4gt8 ADP Sensor protein VraS 2.7.13.3

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
4gt8 ADPSensor protein VraS 2.7.13.3 0.951
1i59 ANPChemotaxis protein CheA 2.7.13.3 0.760
1i5a ACPChemotaxis protein CheA 2.7.13.3 0.757
3ehj ACPSensor histidine kinase DesK 2.7.13.3 0.757
4gqt ADPHeat shock protein 90 / 0.744
1i5b ANPChemotaxis protein CheA 2.7.13.3 0.742
4prx ADPDNA gyrase subunit B / 0.742
1i58 ACPChemotaxis protein CheA 2.7.13.3 0.738
4r39 ANPBlue-light-activated histidine kinase 2 2.7.13.3 0.737
1byq ADPHeat shock protein HSP 90-alpha / 0.733
3t0z ATPHeat shock protein HSP 90-alpha / 0.733
4xcj ADPHeat shock cognate 90 kDa protein / 0.730
4xcl AGSHeat shock cognate 90 kDa protein / 0.724
4wuc ANPDNA gyrase subunit B / 0.723
2xk2 ADPHeat shock protein HSP 90-alpha / 0.717
4prv ADPDNA gyrase subunit B / 0.713
4r3a ANPBlue-light-activated histidine kinase 2 2.7.13.3 0.713
3crl ANP[Pyruvate dehydrogenase (acetyl-transferring)] kinase isozyme 2, mitochondrial 2.7.11.2 0.712
4xc0 ACPHeat shock cognate 90 kDa protein / 0.708
3t2s AGSHeat shock protein HSP 90-alpha / 0.704
3t1k ANPHeat shock protein HSP 90-alpha / 0.702
1th8 ADPAnti-sigma F factor / 0.701
2e0a ANP[Pyruvate dehydrogenase (acetyl-transferring)] kinase isozyme 4, mitochondrial 2.7.11.2 0.700
3sl2 ATPSensor histidine kinase WalK / 0.697
1yt0 ADPEndoplasmin / 0.692
3t10 ACPHeat shock protein HSP 90-alpha / 0.692
1l0o ADPAnti-sigma F factor / 0.691
5f5r ANPHeat shock protein 75 kDa, mitochondrial / 0.690
2yef ANPHeat shock protein HSP 90-alpha / 0.689
4wud ANPDNA gyrase subunit B / 0.684
2o1u ANPEndoplasmin / 0.682
1amw ADPATP-dependent molecular chaperone HSP82 / 0.680
4pl9 ADPEthylene receptor 1 / 0.679
1id0 ANPSensor protein PhoQ 2.7.13.3 0.672
1i5c ADPChemotaxis protein CheA 2.7.13.3 0.671
1pow TPPPyruvate oxidase 1.2.3.3 0.671
4ww4 ADPRuvB-like helicase / 0.667
5exd TPPOxalate oxidoreductase subunit alpha / 0.665
5exd TPPOxalate oxidoreductase subunit beta / 0.665
1gjv AGS[3-methyl-2-oxobutanoate dehydrogenase [lipoamide]] kinase, mitochondrial 2.7.11.4 0.663
1s16 ANPDNA topoisomerase 4 subunit B / 0.663
3ied AN2HSP90 / 0.662
2zdy ADP[Pyruvate dehydrogenase (acetyl-transferring)] kinase isozyme 4, mitochondrial 2.7.11.2 0.661
4cki ADNProto-oncogene tyrosine-protein kinase receptor Ret 2.7.10.1 0.660
1thn ADPAnti-sigma F factor / 0.658
4bix ADPSensor histidine kinase CpxA / 0.658
3zkb ANPDNA gyrase subunit B / 0.654
1nhh ANPDNA mismatch repair protein MutL / 0.652
1ei1 ANPDNA gyrase subunit B / 0.651
2wep ADPATP-dependent molecular chaperone HSP82 / 0.651
3vjn ANPEpidermal growth factor receptor 2.7.10.1 0.651