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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
4b4d FAD Ferredoxin-NADP reductase

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
4b4d FADFerredoxin-NADP reductase / 1.531
2qdx FADFerredoxin--NADP+ reductase / 1.418
3crz FADFerredoxin--NADP+ reductase / 1.276
2vnk FADNADPH:ferredoxin reductase / 1.237
2bgj FADNADPH:ferredoxin reductase / 1.205
2vnh FADNADPH:ferredoxin reductase / 1.170
2vnj FADNADPH:ferredoxin reductase / 1.141
4fk8 FADFerredoxin--NADP reductase / 1.110
2bgi FADNADPH:ferredoxin reductase / 1.088
4k1x FADNADPH:ferredoxin reductase / 1.048
1fdr FADFerredoxin--NADP reductase 1.18.1.2 0.933
1a8p FADFerredoxin--NADP reductase / 0.927
1cqx FADFlavohemoprotein / 0.903
1amo FADNADPH--cytochrome P450 reductase / 0.841
3w2f FADNADH-cytochrome b5 reductase 3 1.6.2.2 0.808
1krh FADBenzoate 1,2-dioxygenase electron transfer component 1.18.1.3 0.800
1j9z FADNADPH--cytochrome P450 reductase / 0.772
4y9r FADNADPH--cytochrome P450 reductase / 0.768
2iml FMNUncharacterized protein / 0.757
2bf4 FADNADPH--cytochrome P450 reductase / 0.755
3w2e FADNADH-cytochrome b5 reductase 3 1.6.2.2 0.755
2vyq FADFerredoxin--NADP reductase 1.18.1.2 0.751
2i51 FMNPyridoxamine 5'-phosphate oxidase-related, FMN-binding / 0.750
3ojw FADNADPH--cytochrome P450 reductase / 0.750
2hq9 FADMll6688 protein / 0.744
4y7c FADNADPH--cytochrome P450 reductase / 0.743
2cnd FADNitrate reductase [NADH] 1.7.1.1 0.742
3qfs FADNADPH--cytochrome P450 reductase / 0.742
2ok8 FADFerredoxin--NADP reductase, apicoplast / 0.739
4hms FMNPhenazine biosynthesis protein PhzG 1.4 0.739
3in6 FMNUncharacterized protein / 0.737
3qe2 FADNADPH--cytochrome P450 reductase / 0.736
3qft FADNADPH--cytochrome P450 reductase / 0.735
2bn4 FADNADPH--cytochrome P450 reductase / 0.734
1w87 FADFerredoxin--NADP reductase 1.18.1.2 0.732
2gpj FADSiderophore-interacting protein / 0.731
3qfc FADNADPH--cytochrome P450 reductase / 0.729
4y9u FADNADPH--cytochrome P450 reductase / 0.728
1ep3 FADDihydroorotate dehydrogenase B (NAD(+)), electron transfer subunit / 0.718
1gvh FADFlavohemoprotein / 0.717
2ou5 FMNPyridoxamine 5'-phosphate oxidase-related FMN-binding protein / 0.717
3ojx FADNADPH--cytochrome P450 reductase / 0.714
3e4v FMNUncharacterized protein / 0.710
1ja1 FADNADPH--cytochrome P450 reductase / 0.708
3fpk FADFerredoxin-NADP reductase / 0.705
1n9l FMNPutative blue light receptor / 0.699
2bpo FADNADPH--cytochrome P450 reductase / 0.699
1efp FADElectron transfer flavoprotein subunit alpha / 0.698
1ty9 FMNPhenazine biosynthesis protein PhzG 1.4 0.698
2pr5 FMNBlue-light photoreceptor / 0.698
1cnf FADNitrate reductase [NADH] 1.7.1.1 0.694
1usc FMNMonooxygenase / 0.692
3qfr FADNADPH--cytochrome P450 reductase / 0.692
2a1u FADElectron transfer flavoprotein subunit alpha, mitochondrial / 0.690
1pkv RBFRiboflavin synthase 2.5.1.9 0.689
2nr4 FMNConserved protein / 0.688
1w35 FADFerredoxin--NADP reductase 1.18.1.2 0.686
3vy2 FMNFMN-binding protein / 0.686
3t50 FMNBlue-light-activated histidine kinase 2.7.13.3 0.685
1efv FADElectron transfer flavoprotein subunit alpha, mitochondrial / 0.684
2i02 FMNPyridoxamine 5'-phosphate oxidase-related, FMN-binding / 0.684
5cho FADFlavin reductase / 0.684
1rz1 FADPhenol 2-hydroxylase component B / 0.683
3a6r FMNFMN-binding protein / 0.683
3a6q FMNFMN-binding protein / 0.682
1w34 FADFerredoxin--NADP reductase 1.18.1.2 0.681
1wli FMNFMN-binding protein / 0.681
4ylf FADDihydroorotate dehydrogenase B (NAD(+)), electron transfer subunit homolog / 0.681
1ja0 FADNADPH--cytochrome P450 reductase / 0.680
4d5g FADCyclohexane-1,2-dione hydrolase 3.7.1.11 0.680
2xnc FADFerredoxin--NADP reductase, leaf isozyme, chloroplastic 1.18.1.2 0.676
1f20 FADNitric oxide synthase, brain 1.14.13.39 0.675
2eix FADNADH-cytochrome b5 reductase / 0.675
5j3w FMNSensory box protein / 0.675
2ign FADPyranose 2-oxidase / 0.674
2r6h FADNa(+)-translocating NADH-quinone reductase subunit F / 0.673
1cc2 FADCholesterol oxidase 1.1.3.6 0.671
4eeu FMNPhototropin-2 2.7.11.1 0.669
2v1a FMNNPH1-1 / 0.667
1b2r FADFerredoxin--NADP reductase 1.18.1.2 0.666
4f07 FADStyrene monooxygenase component 2 / 0.666
1i0s FMNFerric-chelate reductase (NAD(P)H) / 0.664
3bnk FMNFlavoredoxin / 0.664
1go2 FADFerredoxin--NADP reductase 1.18.1.2 0.663
1h42 FADFerredoxin--NADP reductase 1.18.1.2 0.662
1qg0 FADFerredoxin--NADP reductase, leaf isozyme, chloroplastic 1.18.1.2 0.662
2wet FADTryptophan 5-halogenase / 0.662
3amf FMNFMN-binding protein / 0.662
4uaj FADNa(+)-translocating NADH-quinone reductase subunit F / 0.662
4wqm FADToluene-4-monooxygenase electron transfer component 1.18.1.3 0.662
2pia FMNPhthalate dioxygenase reductase / 0.661
3w5h FADNADH-cytochrome b5 reductase 3 1.6.2.2 0.659
4k5r FADOxygenase / 0.658
4utl FNRXenobiotic reductase / 0.658
3nix FADFlavoprotein/dehydrogenase / 0.657
4hhd FMNPhototropin-1 2.7.11.1 0.657
3vy5 FMNFMN-binding protein / 0.656
4yau FADNADPH--cytochrome P450 reductase / 0.656
1a9y UPGUDP-glucose 4-epimerase 5.1.3.2 0.655
2b5o FADFerredoxin--NADP reductase 1.18.1.2 0.655
2gqf FADUncharacterized protein HI_0933 / 0.655
3awh FMNFMN-binding protein / 0.655
3k4c FADPyranose 2-oxidase / 0.655
4gu5 FADCryptochrome-1 / 0.655
1eje FMNProtein MTH_152 / 0.654
1udb UFGUDP-glucose 4-epimerase 5.1.3.2 0.654
2rc6 FADFerredoxin--NADP reductase / 0.654
1tll FADNitric oxide synthase, brain 1.14.13.39 0.653
2ed4 FAD4-hydroxyphenylacetate 3-monooxygenase reductase component 1.5.1.36 0.653
1tj2 FADBifunctional protein PutA 1.5.5.2 0.652
2rc5 FADFerredoxin--NADP reductase / 0.651
4af6 FADFerredoxin--NADP reductase, leaf isozyme, chloroplastic 1.18.1.2 0.651
1cne FADNitrate reductase [NADH] 1.7.1.1 0.650
3a20 FMNFMN-binding protein / 0.650