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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
3jx6 JI5 Nitric oxide synthase, brain 1.14.13.39

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
3jx6 JI5Nitric oxide synthase, brain 1.14.13.39 0.823
3png 8CXNitric oxide synthase, brain 1.14.13.39 0.761
3rqm X2ENitric oxide synthase, brain 1.14.13.39 0.754
3nlq JRRNitric oxide synthase, brain 1.14.13.39 0.752
3jx3 JI5Nitric oxide synthase, brain 1.14.13.39 0.748
3nlj JRRNitric oxide synthase, brain 1.14.13.39 0.748
1n35 CH1RNA-directed RNA polymerase lambda-3 2.7.7.48 0.744
1nmd ATPMajor actin / 0.744
1xxj UNCUricase 1.7.3.3 0.744
2cgw 3C3Serine/threonine-protein kinase Chk1 2.7.11.1 0.744
2d09 FLVBiflaviolin synthase CYP158A2 / 0.744
2fzk CTPAspartate carbamoyltransferase regulatory chain / 0.744
2oap ANPType II secretion system protein (GspE-2) / 0.744
2z7q ACPRibosomal protein S6 kinase alpha-1 2.7.11.1 0.744
3cwq ADPParA family chromosome partitioning protein / 0.744
3fzf ATPHeat shock cognate 71 kDa protein / 0.744
3u9d ATPActin, alpha skeletal muscle / 0.744
3ypi PGHTriosephosphate isomerase 5.3.1.1 0.744
3zzn ADPL-lactate dehydrogenase / 0.744
5bnt NAPAspartate-semialdehyde dehydrogenase 1.2.1.11 0.744
3jwt JI5Nitric oxide synthase, brain 1.14.13.39 0.743
3nny 59RNitric oxide synthase, brain 1.14.13.39 0.721
4imw 1EVNitric oxide synthase, brain 1.14.13.39 0.721
3nlr JRSNitric oxide synthase, brain 1.14.13.39 0.715
4imt 1EWNitric oxide synthase, brain 1.14.13.39 0.714
3rql X2DNitric oxide synthase, brain 1.14.13.39 0.712
3rqj Y2BNitric oxide synthase, brain 1.14.13.39 0.706
3svq JK4Nitric oxide synthase, brain 1.14.13.39 0.702
3n61 XFJNitric oxide synthase, brain 1.14.13.39 0.701
3pnf 8BXNitric oxide synthase, brain 1.14.13.39 0.693
3nly 3XCNitric oxide synthase, brain 1.14.13.39 0.689
4jsi Q05Nitric oxide synthase, brain 1.14.13.39 0.685
3nlz 3XDNitric oxide synthase, brain 1.14.13.39 0.684
3n62 XFJNitric oxide synthase, brain 1.14.13.39 0.683
4lux QJ8Nitric oxide synthase, brain 1.14.13.39 0.679
3ufr H5WNitric oxide synthase, brain 1.14.13.39 0.678
3svp JK5Nitric oxide synthase, brain 1.14.13.39 0.677
3jws JI4Nitric oxide synthase, brain 1.14.13.39 0.673
3nln JRSNitric oxide synthase, brain 1.14.13.39 0.670
3ufq HW5Nitric oxide synthase, brain 1.14.13.39 0.668
3pne 8AXNitric oxide synthase, brain 1.14.13.39 0.663
1fp6 ADPNitrogenase iron protein 1 1.18.6.1 0.660
1yra GDPGPN-loop GTPase PAB0955 / 0.660
2hru ADPPhosphoribosylformylglycinamidine synthase subunit PurL / 0.660
2puf GUNHTH-type transcriptional repressor PurR / 0.660
2xtn GTPGTPase IMAP family member 2 / 0.660
3fwy ADPLight-independent protochlorophyllide reductase iron-sulfur ATP-binding protein / 0.660
3kjg ADPCO dehydrogenase/acetyl-CoA synthase complex, accessory protein CooC / 0.660
3nlw 3XFNitric oxide synthase, brain 1.14.13.39 0.660
4cdg ADPBloom syndrome protein 3.6.4.12 0.660
4nxv GDPMitochondrial dynamics protein MID51 / 0.660
4o3m ADPBloom syndrome protein 3.6.4.12 0.660
3nlp JSSNitric oxide synthase, brain 1.14.13.39 0.659
4jsf QJ4Nitric oxide synthase, brain 1.14.13.39 0.659
3rqk X2CNitric oxide synthase, brain 1.14.13.39 0.657
4cx4 HW9Nitric oxide synthase, brain 1.14.13.39 0.655
4cx5 HW8Nitric oxide synthase, brain 1.14.13.39 0.655
3b3o JI3Nitric oxide synthase, brain 1.14.13.39 0.654