2.800 Å
X-ray
2006-07-20
| Name: | Phosphoribosylformylglycinamidine synthase subunit PurL |
|---|---|
| ID: | PURL_THEMA |
| AC: | Q9X0X3 |
| Organism: | Thermotoga maritima |
| Reign: | Bacteria |
| TaxID: | 243274 |
| EC Number: | / |
| Chain Name: | Percentage of Residues within binding site |
|---|---|
| A | 100 % |
| B-Factor: | 38.145 |
|---|---|
| Number of residues: | 38 |
| Including | |
| Standard Amino Acids: | 35 |
| Non Standard Amino Acids: | 3 |
| Water Molecules: | 0 |
| Cofactors: | |
| Metals: | MG MG MG |
| Ligandability | Volume (Å3) |
|---|---|
| 0.437 | 722.250 |
| % Hydrophobic | % Polar |
|---|---|
| 41.12 | 58.88 |
| According to VolSite | |

| HET Code: | ADP |
|---|---|
| Formula: | C10H12N5O10P2 |
| Molecular weight: | 424.177 g/mol |
| DrugBank ID: | - |
| Buried Surface Area: | 66.73 % |
| Polar Surface area: | 260.7 Å2 |
| Number of | |
|---|---|
| H-Bond Acceptors: | 14 |
| H-Bond Donors: | 3 |
| Rings: | 3 |
| Aromatic rings: | 2 |
| Anionic atoms: | 3 |
| Cationic atoms: | 0 |
| Rule of Five Violation: | 1 |
| Rotatable Bonds: | 6 |
| X | Y | Z |
|---|---|---|
| 27.4639 | -28.6497 | 132.34 |
Image generated by PoseView
Represent the protein/ligand binding mode, centered on the ligand
Dashed lines represents hydrogen bonds and metal interactions
Green residue labels for amino acids with hydrophobic contacts (green lines) to the ligand
| Ligand | Protein | Interaction | |||
|---|---|---|---|---|---|
| Atom | Atom | Residue | Distance (Å) | Angle (°) | Type |
| O3B | NZ | LYS- 68 | 2.81 | 142.56 | H-Bond (Protein Donor) |
| O3B | NZ | LYS- 68 | 2.81 | 0 | Ionic (Protein Cationic) |
| O1A | NZ | LYS- 68 | 3.92 | 0 | Ionic (Protein Cationic) |
| N6 | OD1 | ASN- 442 | 3 | 135.07 | H-Bond (Ligand Donor) |
| N1 | ND2 | ASN- 442 | 3.01 | 129.22 | H-Bond (Protein Donor) |
| O2' | N | GLY- 477 | 3.23 | 153.53 | H-Bond (Protein Donor) |
| N6 | O | ASN- 478 | 3.2 | 128.68 | H-Bond (Ligand Donor) |
| O2B | MG | MG- 901 | 2.78 | 0 | Metal Acceptor |
| O3B | MG | MG- 901 | 2.63 | 0 | Metal Acceptor |
| O1B | MG | MG- 902 | 2.42 | 0 | Metal Acceptor |
| O2B | MG | MG- 902 | 2.79 | 0 | Metal Acceptor |
| O2B | MG | MG- 903 | 2.71 | 0 | Metal Acceptor |