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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
3ce0 P34 Poly [ADP-ribose] polymerase 3 2.4.2.30

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
3ce0 P34Poly [ADP-ribose] polymerase 3 2.4.2.30 0.872
4pnr G18Tankyrase-2 2.4.2.30 0.742
4gv2 5MEPoly [ADP-ribose] polymerase 3 2.4.2.30 0.731
4r5w XAVPoly [ADP-ribose] polymerase 1 2.4.2.30 0.708
4tjy 3GNTankyrase-2 2.4.2.30 0.704
4pnm NU1Tankyrase-2 2.4.2.30 0.703
2rcw AAIPoly [ADP-ribose] polymerase 1 2.4.2.30 0.699
4avu LDRTankyrase-2 2.4.2.30 0.692
1pax DHQPoly [ADP-ribose] polymerase 1 2.4.2.30 0.681
4msg 2C6Tankyrase-1 2.4.2.30 0.678
4gv0 8MEPoly [ADP-ribose] polymerase 3 2.4.2.30 0.676
1efy BZCPoly [ADP-ribose] polymerase 1 2.4.2.30 0.671
4bj9 UHBTankyrase-2 2.4.2.30 0.669
5ewk P34Putative secreted protein / 0.668
4gv7 MEWPoly [ADP-ribose] polymerase 1 2.4.2.30 0.667
4gv4 MEJPoly [ADP-ribose] polymerase 3 2.4.2.30 0.665
4l2f 1V3Tankyrase-2 2.4.2.30 0.663
1g7u PEP2-dehydro-3-deoxyphosphooctonate aldolase 2.5.1.55 0.660
4e5i 0N9Polymerase acidic protein / 0.660
5dsy UHBPoly [ADP-ribose] polymerase 2 2.4.2.30 0.651
4e5f 0N7Polymerase acidic protein / 0.650