2.700 Å
X-ray
2015-09-17
Name: | Poly [ADP-ribose] polymerase 2 |
---|---|
ID: | PARP2_HUMAN |
AC: | Q9UGN5 |
Organism: | Homo sapiens |
Reign: | Eukaryota |
TaxID: | 9606 |
EC Number: | 2.4.2.30 |
Chain Name: | Percentage of Residues within binding site |
---|---|
C | 100 % |
B-Factor: | 48.783 |
---|---|
Number of residues: | 36 |
Including | |
Standard Amino Acids: | 36 |
Non Standard Amino Acids: | 0 |
Water Molecules: | 0 |
Cofactors: | |
Metals: |
Ligandability | Volume (Å3) |
---|---|
1.017 | 850.500 |
% Hydrophobic | % Polar |
---|---|
44.05 | 55.95 |
According to VolSite |
HET Code: | UHB |
---|---|
Formula: | C24H28N9O6 |
Molecular weight: | 538.536 g/mol |
DrugBank ID: | - |
Buried Surface Area: | 60.84 % |
Polar Surface area: | 202.25 Å2 |
Number of | |
---|---|
H-Bond Acceptors: | 10 |
H-Bond Donors: | 6 |
Rings: | 6 |
Aromatic rings: | 3 |
Anionic atoms: | 0 |
Cationic atoms: | 1 |
Rule of Five Violation: | 3 |
Rotatable Bonds: | 5 |
X | Y | Z |
---|---|---|
14.0311 | 9.45867 | 10.4709 |
Represent the protein/ligand binding mode, centered on the ligand
Dashed lines represents hydrogen bonds and metal interactions
Green residue labels for amino acids with hydrophobic contacts (green lines) to the ligand
Ligand | Protein | Interaction | |||
---|---|---|---|---|---|
Atom | Atom | Residue | Distance (Å) | Angle (°) | Type |
O29 | NE2 | HIS- 415 | 2.53 | 162.92 | H-Bond (Protein Donor) |
N09 | O | GLY- 416 | 2.9 | 158.9 | H-Bond (Ligand Donor) |
O10 | N | GLY- 416 | 2.73 | 170.69 | H-Bond (Protein Donor) |
O29 | OG | SER- 417 | 3.03 | 170 | H-Bond (Ligand Donor) |
N39 | O | GLY- 429 | 3.09 | 124.95 | H-Bond (Ligand Donor) |
N34 | N | ARG- 431 | 2.99 | 163.8 | H-Bond (Protein Donor) |
C03 | CB | TYR- 449 | 3.54 | 0 | Hydrophobic |
C01 | CB | ALA- 451 | 4.2 | 0 | Hydrophobic |
O10 | OG | SER- 457 | 2.91 | 167.04 | H-Bond (Protein Donor) |
C02 | CB | GLU- 545 | 3.88 | 0 | Hydrophobic |