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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
2wog ZZD Kinesin-like protein KIF11

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
2wog ZZDKinesin-like protein KIF11 / 1.107
2x2r X2OKinesin-like protein KIF11 / 1.021
3ken ZZDKinesin-like protein KIF11 / 0.990
4bbg V02Kinesin-like protein KIF11 / 0.868
2fme 3QCKinesin-like protein KIF11 / 0.752
1drt PCVClavaminate synthase 1 1.14.11.21 0.744
4a51 DQ8Kinesin-like protein KIF11 / 0.714
2x7d EGBKinesin-like protein KIF11 / 0.686
3elu SAMMethyltransferase / 0.666
3fwy ADPLight-independent protochlorophyllide reductase iron-sulfur ATP-binding protein / 0.663
4o3m ADPBloom syndrome protein 3.6.4.12 0.661
1h48 C5P2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase 4.6.1.12 0.660
1n35 CH1RNA-directed RNA polymerase lambda-3 2.7.7.48 0.660
1n38 U3HRNA-directed RNA polymerase lambda-3 2.7.7.48 0.660
1xxj UNCUricase 1.7.3.3 0.660
2cgw 3C3Serine/threonine-protein kinase Chk1 2.7.11.1 0.660
2d09 FLVBiflaviolin synthase CYP158A2 / 0.660
2fzk CTPAspartate carbamoyltransferase regulatory chain / 0.660
2oap ANPType II secretion system protein (GspE-2) / 0.660
2z7q ACPRibosomal protein S6 kinase alpha-1 2.7.11.1 0.660
2zs9 ADPPantothenate kinase 2.7.1.33 0.660
3f8r NAPNADH oxidase/thioredoxin reductase / 0.660
3u9d ATPActin, alpha skeletal muscle / 0.660
3ypi PGHTriosephosphate isomerase 5.3.1.1 0.660
3zzn ADPL-lactate dehydrogenase / 0.660
4e5l DBHPolymerase acidic protein / 0.660
5bnt NAPAspartate-semialdehyde dehydrogenase 1.2.1.11 0.660
4nxx GDPMitochondrial dynamics protein MID51 / 0.658
3k3b L31Kinesin-like protein KIF11 / 0.655
4cdg ADPBloom syndrome protein 3.6.4.12 0.655
1o1s 1NHProtein farnesyltransferase subunit beta 2.5.1.58 0.652
3kjg ADPCO dehydrogenase/acetyl-CoA synthase complex, accessory protein CooC / 0.650
4dlj 6RGMitogen-activated protein kinase 14 / 0.650