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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
2c12 FAD Nitroalkane oxidase 1.7.3.1

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
2c12 FADNitroalkane oxidase 1.7.3.1 1.700
3fcj FADNitroalkane oxidase 1.7.3.1 1.468
2zaf FADNitroalkane oxidase 1.7.3.1 1.465
3mkh FADNitroalkane oxidase / 1.324
2reh FADNitroalkane oxidase 1.7.3.1 1.286
5jsc FADPutative acyl-CoA dehydrogenase / 0.795
3mpj FADGlutaryl-CoA dehydrogenase 1.3.99.32 0.792
3mpi FADGlutaryl-CoA dehydrogenase 1.3.99.32 0.778
1udy FADMedium-chain specific acyl-CoA dehydrogenase, mitochondrial 1.3.8.7 0.762
2pg0 FADAcyl-CoA dehydrogenase / 0.762
2d29 FADAcyl-CoA dehydrogenase / 0.753
1rx0 FADIsobutyryl-CoA dehydrogenase, mitochondrial 1.3.99 0.751
3pfd FDAAcyl-CoA dehydrogenase FadE25 / 0.742
3oib FDAPutative acyl-CoA dehydrogenase / 0.732
2eba FADPutative glutaryl-CoA dehydrogenase / 0.723
4iv6 FDAIsovaleryl-CoA dehydrogenase / 0.722
3r7k FDAProbable acyl CoA dehydrogenase / 0.720
1jqi FADShort-chain specific acyl-CoA dehydrogenase, mitochondrial / 0.714
1ofd FMNFerredoxin-dependent glutamate synthase 2 1.4.7.1 0.708
3p4t FAOPutative acyl-CoA dehydrogenase / 0.706
1siq FADGlutaryl-CoA dehydrogenase, mitochondrial 1.3.8.6 0.705
2dvl FADAcyl-CoA dehydrogenase / 0.704
3nf4 FADAcyl-CoA dehydrogenase domain-containing protein / 0.704
3owa FADAcyl-CoA dehydrogenase / 0.702
1yki FMNOxygen-insensitive NAD(P)H nitroreductase / 0.701
4x28 FDAAcyl-CoA dehydrogenase FadE26 / 0.701
4x28 FDAAcyl-CoA dehydrogenase FadE27 / 0.701
5af7 FADAcyl-CoA dehydrogenase / 0.692
3hji FADVivid PAS protein VVD / 0.688
2isl FNR5,6-dimethylbenzimidazole synthase 1.13.11.79 0.687
2wzw FMNNitroreductase NfnB / 0.686
3lsi FADPyranose 2-oxidase / 0.685
1q45 FMN12-oxophytodienoate reductase 3 1.3.1.42 0.684
1zmc FADDihydrolipoyl dehydrogenase, mitochondrial 1.8.1.4 0.682
3k4c FADPyranose 2-oxidase / 0.682
4rsl FADFructosyl peptide oxidase / 0.682
4bf9 FMNtRNA-dihydrouridine(16) synthase / 0.681
2isk FNR5,6-dimethylbenzimidazole synthase 1.13.11.79 0.680
4jdr FADDihydrolipoyl dehydrogenase 1.8.1.4 0.680
3p8j FMNPentaerythritol tetranitrate reductase / 0.678
4zoh FADPutative oxidoreductase FAD-binding subunit / 0.678
1kif FADD-amino-acid oxidase 1.4.3.3 0.677
4e2b FMNDehydrogenase / 0.677
1kbq FADNAD(P)H dehydrogenase [quinone] 1 1.6.5.2 0.676
1ve9 FADD-amino-acid oxidase 1.4.3.3 0.676
4mih FADPyranose 2-oxidase 1.1.3.10 0.676
5j60 FADThioredoxin reductase / 0.676
1h63 FMNPentaerythritol tetranitrate reductase / 0.675
1h69 FADNAD(P)H dehydrogenase [quinone] 1 1.6.5.2 0.675
5hsa FASAlcohol oxidase 1 1.1.3.13 0.675
1ep1 FMNDihydroorotate dehydrogenase B (NAD(+)), catalytic subunit 1.3.1.14 0.674
3mdd FADMedium-chain specific acyl-CoA dehydrogenase, mitochondrial 1.3.8.7 0.674
3eo8 FMNPutative nitroreductase / 0.673
4k5r FADOxygenase / 0.672
3djl FADPutative acyl-CoA dehydrogenase AidB 1.3.99 0.671
4aut FADDecaprenylphosphoryl-beta-D-ribose oxidase / 0.671
3gh8 FMNIodotyrosine deiodinase 1 1.21.1.1 0.670
4hnb FMNLOV protein / 0.669
1xyv FMNFlavodoxin / 0.667
1djq FMNTrimethylamine dehydrogenase 1.5.8.2 0.666
2wzv FMNNitroreductase NfnB / 0.666
3lsh FADPyranose 2-oxidase / 0.665
2ohh FMNType A flavoprotein FprA 1 0.664
4tmb FMNOld yellow enzyme / 0.664
5g3s FDAFlavin-dependent L-tryptophan oxidase VioA / 0.664
2pdt FADVivid PAS protein VVD / 0.663
4fwe FADLysine-specific histone demethylase 1B 1 0.663
2gh5 FADGlutathione reductase, mitochondrial 1.8.1.7 0.662
4e2d FMNDehydrogenase / 0.662
1d4a FADNAD(P)H dehydrogenase [quinone] 1 1.6.5.2 0.661
3hj9 FMNUncharacterized protein / 0.661
4cnk FADL-amino acid oxidase / 0.661
4mok FADPyranose 2-oxidase / 0.661
4qi5 FADCellobiose dehydrogenase / 0.661
5eai FADNAD(P)H dehydrogenase [quinone] 1 1.6.5.2 0.661
1bwl FMNNADPH dehydrogenase 1 1.6.99.1 0.660
2eq8 FADDihydrolipoyl dehydrogenase / 0.660
3tjl FMNNADPH dehydrogenase / 0.660
4aws FMNNADH:flavin oxidoreductase Sye1 / 0.660
4nev FADTrypanothione reductase / 0.660
4awt FMNNADH:flavin oxidoreductase Sye1 / 0.659
1gal FADGlucose oxidase 1.1.3.4 0.658
1sbz FMNProbable UbiX-like flavin prenyltransferase / 0.658
3esz FMNFlavodoxin / 0.658
4iql FMNEnoyl-(Acyl-carrier-protein) reductase II / 0.658
4l82 FMNUncharacterized protein / 0.658
2z1q FADAcyl-CoA dehydrogenase / 0.657
3qvp FADGlucose oxidase 1.1.3.4 0.657
3gfd FMNIodotyrosine deiodinase 1 1.21.1.1 0.656
3v76 FDAUncharacterized protein / 0.656
4opl FDAConserved Archaeal protein / 0.654
3qe2 FMNNADPH--cytochrome P450 reductase / 0.653
4bjz FADProbable salicylate monooxygenase / 0.653
4eet FMNPhototropin-2 2.7.11.1 0.653
4hsu FADLysine-specific histone demethylase 1B 1 0.653
4uth FMNXenobiotic reductase / 0.653
5er0 FADUncharacterized NAD(FAD)-dependent dehydrogenase / 0.653
2yg4 FADPutrescine oxidase / 0.652
2ign FADPyranose 2-oxidase / 0.651
3gag FMNPutative NADH dehydrogenase NAD(P)H nitroreductase / 0.651
3is2 FADVivid PAS protein VVD / 0.651
4p13 FADMedium-chain specific acyl-CoA dehydrogenase, mitochondrial 1.3.8.7 0.651
1oya FMNNADPH dehydrogenase 1 1.6.99.1 0.650
2f5z FADDihydrolipoyl dehydrogenase, mitochondrial 1.8.1.4 0.650
3rnm FADDihydrolipoyl dehydrogenase, mitochondrial 1.8.1.4 0.650
4h6p FMNChromate reductase / 0.650
5ahs FADAcyl-CoA dehydrogenase / 0.650