sc-PDB
An Annotated Database of Druggable Binding Sites from the Protein DataBank
An Annotated Database of Druggable Binding Sites from the Protein DataBank
Binding Modes are compared using Grim.
For more information, please see the following publication:
Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65
| PDB ID | HET | Uniprot Name | EC Number |
|---|---|---|---|
| 1efv | FAD | Electron transfer flavoprotein subunit alpha, mitochondrial |
| PDB ID | HET | Uniprot Name | EC Number | Binding Mode Similarity |
Align |
|---|---|---|---|---|---|
| 1efv | FAD | Electron transfer flavoprotein subunit alpha, mitochondrial | / | 1.609 | |
| 2a1u | FAD | Electron transfer flavoprotein subunit alpha, mitochondrial | / | 1.495 | |
| 1efp | FAD | Electron transfer flavoprotein subunit alpha | / | 1.304 | |
| 3clt | FAD | Electron transfer flavoprotein subunit alpha | / | 1.162 | |
| 3cls | FAD | Electron transfer flavoprotein subunit alpha | / | 1.155 | |
| 1o97 | FAD | Electron transfer flavoprotein subunit alpha | / | 1.113 | |
| 3clr | FAD | Electron transfer flavoprotein subunit alpha | / | 1.113 | |
| 3clu | FAD | Electron transfer flavoprotein subunit alpha | / | 1.083 | |
| 3ea4 | FAB | Acetolactate synthase, chloroplastic | 2.2.1.6 | 0.794 | |
| 1jsc | FAD | Acetolactate synthase catalytic subunit, mitochondrial | 2.2.1.6 | 0.787 | |
| 4d5g | FAD | Cyclohexane-1,2-dione hydrolase | 3.7.1.11 | 0.732 | |
| 3e9y | FAB | Acetolactate synthase, chloroplastic | 2.2.1.6 | 0.729 | |
| 2z6d | FMN | Phototropin-2 | 2.7.11.1 | 0.725 | |
| 4kuk | RBF | Putative blue-light photoreceptor | / | 0.715 | |
| 5ahk | FAD | Acetolactate synthase II, large subunit | / | 0.713 | |
| 2v0u | FMN | NPH1-1 | / | 0.711 | |
| 3gg1 | FMN | Uncharacterized protein | / | 0.704 | |
| 4hmx | FMN | Pyridoxamine 5'-phosphate oxidase | / | 0.704 | |
| 3gfx | FMN | Uncharacterized protein | / | 0.703 | |
| 4hmw | FMN | Pyridoxamine 5'-phosphate oxidase | / | 0.703 | |
| 5djt | FMN | NPH1-2 | / | 0.702 | |
| 2vnk | FAD | NADPH:ferredoxin reductase | / | 0.700 | |
| 4kuo | RBF | Putative blue-light photoreceptor | / | 0.699 | |
| 5ez7 | FAD | Probable FAD-dependent oxidoreductase PA4991 | / | 0.699 | |
| 3nyc | FAD | FAD-dependent catabolic D-arginine dehydrogenase DauA | / | 0.698 | |
| 2bgj | FAD | NADPH:ferredoxin reductase | / | 0.695 | |
| 2ign | FAD | Pyranose 2-oxidase | / | 0.688 | |
| 3lsh | FAD | Pyranose 2-oxidase | / | 0.686 | |
| 3lsi | FAD | Pyranose 2-oxidase | / | 0.684 | |
| 4b4d | FAD | Ferredoxin-NADP reductase | / | 0.684 | |
| 4ees | FMN | Phototropin-2 | 2.7.11.1 | 0.684 | |
| 2igo | FAD | Pyranose 2-oxidase | / | 0.682 | |
| 1n9n | FMN | Putative blue light receptor | / | 0.681 | |
| 2wzw | FMN | Nitroreductase NfnB | / | 0.681 | |
| 1t6y | FMN | Riboflavin biosynthesis protein | / | 0.680 | |
| 2vnh | FAD | NADPH:ferredoxin reductase | / | 0.680 | |
| 1n07 | FMN | Riboflavin kinase | 2.7.1.26 | 0.679 | |
| 3pl8 | FAD | Pyranose 2-oxidase | / | 0.679 | |
| 4opl | FDA | Conserved Archaeal protein | / | 0.678 | |
| 3crz | FAD | Ferredoxin--NADP+ reductase | / | 0.676 | |
| 4yac | NAI | C alpha-dehydrogenase | / | 0.676 | |
| 1n9l | FMN | Putative blue light receptor | / | 0.675 | |
| 2bn4 | FAD | NADPH--cytochrome P450 reductase | / | 0.675 | |
| 2v1a | FMN | NPH1-1 | / | 0.675 | |
| 3gfy | FMN | Uncharacterized protein | / | 0.675 | |
| 4wf0 | FMN | NPH1-1 | / | 0.675 | |
| 1qg0 | FAD | Ferredoxin--NADP reductase, leaf isozyme, chloroplastic | 1.18.1.2 | 0.674 | |
| 1vfr | FMN | Major NAD(P)H-flavin oxidoreductase | 1.6.99 | 0.674 | |
| 2bgi | FAD | NADPH:ferredoxin reductase | / | 0.673 | |
| 1a8p | FAD | Ferredoxin--NADP reductase | / | 0.668 | |
| 1m2j | APR | NAD-dependent protein deacylase 1 | / | 0.668 | |
| 2vnj | FAD | NADPH:ferredoxin reductase | / | 0.668 | |
| 1pox | FAD | Pyruvate oxidase | 1.2.3.3 | 0.667 | |
| 4hms | FMN | Phenazine biosynthesis protein PhzG | 1.4 | 0.667 | |
| 4mok | FAD | Pyranose 2-oxidase | / | 0.667 | |
| 1t6z | RBF | Riboflavin biosynthesis protein | / | 0.666 | |
| 2pan | FAD | Glyoxylate carboligase | 4.1.1.47 | 0.665 | |
| 4af6 | FAD | Ferredoxin--NADP reductase, leaf isozyme, chloroplastic | 1.18.1.2 | 0.664 | |
| 4yus | FMN | Family 3 adenylate cyclase | / | 0.663 | |
| 1b4v | FAD | Cholesterol oxidase | 1.1.3.6 | 0.661 | |
| 2eba | FAD | Putative glutaryl-CoA dehydrogenase | / | 0.661 | |
| 2hsa | FMN | 12-oxophytodienoate reductase 3 | 1.3.1.42 | 0.658 | |
| 3a6q | FMN | FMN-binding protein | / | 0.656 | |
| 1zpt | FAD | 5,10-methylenetetrahydrofolate reductase | 1.5.1.20 | 0.655 | |
| 3qe2 | FAD | NADPH--cytochrome P450 reductase | / | 0.655 | |
| 4eer | FMN | Phototropin-2 | 2.7.11.1 | 0.655 | |
| 4xwz | FAD | Fructosyl amine:oxygen oxidoreductase | / | 0.655 | |
| 2e48 | FAD | D-amino-acid oxidase | 1.4.3.3 | 0.654 | |
| 4e2b | FMN | Dehydrogenase | / | 0.654 | |
| 4m52 | FAD | Dihydrolipoyl dehydrogenase | 1.8.1.4 | 0.654 | |
| 3eo8 | FMN | Putative nitroreductase | / | 0.653 | |
| 3sfd | FAD | Succinate dehydrogenase [ubiquinone] flavoprotein subunit, mitochondrial | / | 0.652 | |
| 4uaj | FAD | Na(+)-translocating NADH-quinone reductase subunit F | / | 0.652 | |
| 2fzn | FAD | Bifunctional protein PutA | 1.5.5.2 | 0.651 | |
| 1cc2 | FAD | Cholesterol oxidase | 1.1.3.6 | 0.650 | |
| 1m2g | APR | NAD-dependent protein deacylase 1 | / | 0.650 | |
| 4c3x | FAD | 3-ketosteroid dehydrogenase | / | 0.650 |