2.800 Å
X-ray
2004-05-07
| Name: | Riboflavin biosynthesis protein |
|---|---|
| ID: | Q9WZW1_THEMA |
| AC: | Q9WZW1 |
| Organism: | Thermotoga maritima |
| Reign: | Bacteria |
| TaxID: | 243274 |
| EC Number: | / |
| Chain Name: | Percentage of Residues within binding site |
|---|---|
| B | 100 % |
| B-Factor: | 91.881 |
|---|---|
| Number of residues: | 20 |
| Including | |
| Standard Amino Acids: | 19 |
| Non Standard Amino Acids: | 1 |
| Water Molecules: | 0 |
| Cofactors: | FMN |
| Metals: | |
| Ligandability | Volume (Å3) |
|---|---|
| 0.451 | 286.875 |
| % Hydrophobic | % Polar |
|---|---|
| 54.12 | 45.88 |
| According to VolSite | |

| HET Code: | ADP |
|---|---|
| Formula: | C10H12N5O10P2 |
| Molecular weight: | 424.177 g/mol |
| DrugBank ID: | - |
| Buried Surface Area: | 52.95 % |
| Polar Surface area: | 260.7 Å2 |
| Number of | |
|---|---|
| H-Bond Acceptors: | 14 |
| H-Bond Donors: | 3 |
| Rings: | 3 |
| Aromatic rings: | 2 |
| Anionic atoms: | 3 |
| Cationic atoms: | 0 |
| Rule of Five Violation: | 1 |
| Rotatable Bonds: | 6 |
| X | Y | Z |
|---|---|---|
| -10.4293 | -8.80359 | 25.4566 |
Image generated by PoseView
Represent the protein/ligand binding mode, centered on the ligand
Dashed lines represents hydrogen bonds and metal interactions
Green residue labels for amino acids with hydrophobic contacts (green lines) to the ligand
| Ligand | Protein | Interaction | |||
|---|---|---|---|---|---|
| Atom | Atom | Residue | Distance (Å) | Angle (°) | Type |
| C3' | CG1 | VAL- 466 | 4.49 | 0 | Hydrophobic |
| C5' | CB | PRO- 479 | 4.23 | 0 | Hydrophobic |
| O3A | N | THR- 480 | 3.07 | 167.15 | H-Bond (Protein Donor) |
| C2' | CB | ALA- 481 | 4.49 | 0 | Hydrophobic |
| N6 | O | ILE- 534 | 3.19 | 157.86 | H-Bond (Ligand Donor) |
| N1 | N | ILE- 534 | 3.26 | 136.56 | H-Bond (Protein Donor) |
| N6 | O | PHE- 537 | 3.05 | 157.87 | H-Bond (Ligand Donor) |
| O3' | OD2 | ASP- 540 | 3.26 | 138.92 | H-Bond (Ligand Donor) |
| O2' | N | LEU- 541 | 3.02 | 128.07 | H-Bond (Protein Donor) |