2.800 Å
X-ray
2004-05-07
Name: | Riboflavin biosynthesis protein |
---|---|
ID: | Q9WZW1_THEMA |
AC: | Q9WZW1 |
Organism: | Thermotoga maritima |
Reign: | Bacteria |
TaxID: | 243274 |
EC Number: | / |
Chain Name: | Percentage of Residues within binding site |
---|---|
B | 100 % |
B-Factor: | 91.881 |
---|---|
Number of residues: | 20 |
Including | |
Standard Amino Acids: | 19 |
Non Standard Amino Acids: | 1 |
Water Molecules: | 0 |
Cofactors: | FMN |
Metals: |
Ligandability | Volume (Å3) |
---|---|
0.451 | 286.875 |
% Hydrophobic | % Polar |
---|---|
54.12 | 45.88 |
According to VolSite |
HET Code: | ADP |
---|---|
Formula: | C10H12N5O10P2 |
Molecular weight: | 424.177 g/mol |
DrugBank ID: | - |
Buried Surface Area: | 52.95 % |
Polar Surface area: | 260.7 Å2 |
Number of | |
---|---|
H-Bond Acceptors: | 14 |
H-Bond Donors: | 3 |
Rings: | 3 |
Aromatic rings: | 2 |
Anionic atoms: | 3 |
Cationic atoms: | 0 |
Rule of Five Violation: | 1 |
Rotatable Bonds: | 6 |
X | Y | Z |
---|---|---|
-10.4293 | -8.80359 | 25.4566 |
Represent the protein/ligand binding mode, centered on the ligand
Dashed lines represents hydrogen bonds and metal interactions
Green residue labels for amino acids with hydrophobic contacts (green lines) to the ligand
Ligand | Protein | Interaction | |||
---|---|---|---|---|---|
Atom | Atom | Residue | Distance (Å) | Angle (°) | Type |
C3' | CG1 | VAL- 466 | 4.49 | 0 | Hydrophobic |
C5' | CB | PRO- 479 | 4.23 | 0 | Hydrophobic |
O3A | N | THR- 480 | 3.07 | 167.15 | H-Bond (Protein Donor) |
C2' | CB | ALA- 481 | 4.49 | 0 | Hydrophobic |
N6 | O | ILE- 534 | 3.19 | 157.86 | H-Bond (Ligand Donor) |
N1 | N | ILE- 534 | 3.26 | 136.56 | H-Bond (Protein Donor) |
N6 | O | PHE- 537 | 3.05 | 157.87 | H-Bond (Ligand Donor) |
O3' | OD2 | ASP- 540 | 3.26 | 138.92 | H-Bond (Ligand Donor) |
O2' | N | LEU- 541 | 3.02 | 128.07 | H-Bond (Protein Donor) |