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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Cavity similarities measured by Shaper
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Cavities are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299

Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
4qohSTLRibosyldihydronicotinamide dehydrogenase [quinone]

Complex with similar cavities

PDB ID HET Uniprot Name EC Number Cavity
Similarity		 Align
4qohSTLRibosyldihydronicotinamide dehydrogenase [quinone]/1.000
3nhpHGZRibosyldihydronicotinamide dehydrogenase [quinone]/0.629
3nhfVVVRibosyldihydronicotinamide dehydrogenase [quinone]/0.598
3nhrRZWRibosyldihydronicotinamide dehydrogenase [quinone]/0.589
4gr9372Ribosyldihydronicotinamide dehydrogenase [quinone]/0.586
3nhkVAPRibosyldihydronicotinamide dehydrogenase [quinone]/0.585
3nfrEWQRibosyldihydronicotinamide dehydrogenase [quinone]/0.583
3ox34X4Ribosyldihydronicotinamide dehydrogenase [quinone]/0.582
4zvmDM2Ribosyldihydronicotinamide dehydrogenase [quinone]/0.582
2qmzLDPRibosyldihydronicotinamide dehydrogenase [quinone]/0.576
3nhlYTRRibosyldihydronicotinamide dehydrogenase [quinone]/0.573
3uxe465Ribosyldihydronicotinamide dehydrogenase [quinone]/0.573
1zx1CB1Ribosyldihydronicotinamide dehydrogenase [quinone]/0.563
1sg0STLRibosyldihydronicotinamide dehydrogenase [quinone]/0.559
2bzsCB1Ribosyldihydronicotinamide dehydrogenase [quinone]/0.549
4fgj1PQRibosyldihydronicotinamide dehydrogenase [quinone]/0.535
3g5mFADRibosyldihydronicotinamide dehydrogenase [quinone]/0.534
3gamMXXRibosyldihydronicotinamide dehydrogenase [quinone]/0.532
3ox279XRibosyldihydronicotinamide dehydrogenase [quinone]/0.531
3ox1695Ribosyldihydronicotinamide dehydrogenase [quinone]/0.526
3owxXRARibosyldihydronicotinamide dehydrogenase [quinone]/0.521
1qr2FADRibosyldihydronicotinamide dehydrogenase [quinone]/0.516
4zvnFADRibosyldihydronicotinamide dehydrogenase [quinone]/0.513
1xi2CB1Ribosyldihydronicotinamide dehydrogenase [quinone]/0.502
4gqiM49Ribosyldihydronicotinamide dehydrogenase [quinone]/0.500
4zvlFADRibosyldihydronicotinamide dehydrogenase [quinone]/0.498
3nhyA7BRibosyldihydronicotinamide dehydrogenase [quinone]/0.491
3o73O73Ribosyldihydronicotinamide dehydrogenase [quinone]/0.491
3nhjA2ZRibosyldihydronicotinamide dehydrogenase [quinone]/0.485
3nhwZXZRibosyldihydronicotinamide dehydrogenase [quinone]/0.480
3uxhUXHRibosyldihydronicotinamide dehydrogenase [quinone]/0.475
4qoeFADRibosyldihydronicotinamide dehydrogenase [quinone]/0.466
2qmyFADRibosyldihydronicotinamide dehydrogenase [quinone]/0.445