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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Cavity similarities measured by Shaper
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Cavities are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299

Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
4gqiM49Ribosyldihydronicotinamide dehydrogenase [quinone]

Complex with similar cavities

PDB ID HET Uniprot Name EC Number Cavity
Similarity		 Align
4gqiM49Ribosyldihydronicotinamide dehydrogenase [quinone]/1.000
3uxhUXHRibosyldihydronicotinamide dehydrogenase [quinone]/0.750
3nhwZXZRibosyldihydronicotinamide dehydrogenase [quinone]/0.724
3nhjA2ZRibosyldihydronicotinamide dehydrogenase [quinone]/0.715
3ox34X4Ribosyldihydronicotinamide dehydrogenase [quinone]/0.658
3nhkVAPRibosyldihydronicotinamide dehydrogenase [quinone]/0.644
3nhlYTRRibosyldihydronicotinamide dehydrogenase [quinone]/0.636
4zvmDM2Ribosyldihydronicotinamide dehydrogenase [quinone]/0.626
3ox1695Ribosyldihydronicotinamide dehydrogenase [quinone]/0.623
3nhfVVVRibosyldihydronicotinamide dehydrogenase [quinone]/0.618
1sg0STLRibosyldihydronicotinamide dehydrogenase [quinone]/0.611
3o73O73Ribosyldihydronicotinamide dehydrogenase [quinone]/0.610
3owxXRARibosyldihydronicotinamide dehydrogenase [quinone]/0.606
2bzsCB1Ribosyldihydronicotinamide dehydrogenase [quinone]/0.605
4qohSTLRibosyldihydronicotinamide dehydrogenase [quinone]/0.597
3nhpHGZRibosyldihydronicotinamide dehydrogenase [quinone]/0.590
3nhuM42Ribosyldihydronicotinamide dehydrogenase [quinone]/0.587
2qmzLDPRibosyldihydronicotinamide dehydrogenase [quinone]/0.585
4gr9372Ribosyldihydronicotinamide dehydrogenase [quinone]/0.580
4fgj1PQRibosyldihydronicotinamide dehydrogenase [quinone]/0.577
3ox279XRibosyldihydronicotinamide dehydrogenase [quinone]/0.571
4zvnFADRibosyldihydronicotinamide dehydrogenase [quinone]/0.570
3nfrEWQRibosyldihydronicotinamide dehydrogenase [quinone]/0.564
3uxe465Ribosyldihydronicotinamide dehydrogenase [quinone]/0.561
1zx1CB1Ribosyldihydronicotinamide dehydrogenase [quinone]/0.553
3nhyA7BRibosyldihydronicotinamide dehydrogenase [quinone]/0.551
1xi2CB1Ribosyldihydronicotinamide dehydrogenase [quinone]/0.548
3nhrRZWRibosyldihydronicotinamide dehydrogenase [quinone]/0.540
3g5mFADRibosyldihydronicotinamide dehydrogenase [quinone]/0.538
1qr2FADRibosyldihydronicotinamide dehydrogenase [quinone]/0.535
4qoeFADRibosyldihydronicotinamide dehydrogenase [quinone]/0.527
4zvlFADRibosyldihydronicotinamide dehydrogenase [quinone]/0.523
4qofFMNRibosyldihydronicotinamide dehydrogenase [quinone]/0.519
3gamMXXRibosyldihydronicotinamide dehydrogenase [quinone]/0.510
1g3mPCQEstrogen sulfotransferase2.8.2.40.447
2g8yNADHydroxycarboxylate dehydrogenase B/0.445
4pkl1GHUncharacterized protein/0.441