sc-PDB
An Annotated Database of Druggable Binding Sites from the Protein DataBank
An Annotated Database of Druggable Binding Sites from the Protein DataBank
Cavities are compared using Shaper.
For more information, please see the following publication:
Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299
| PDB ID | HET | Uniprot Name | EC Number |
|---|---|---|---|
| 4egk | RDC | Heat shock protein HSP 90-alpha |
| PDB ID | HET | Uniprot Name | EC Number | Cavity Similarity |
Align |
|---|---|---|---|---|---|
| 4egk | RDC | Heat shock protein HSP 90-alpha | / | 1.000 | |
| 2qg0 | A94 | Heat shock protein HSP 90-alpha | / | 0.587 | |
| 2bsm | BSM | Heat shock protein HSP 90-alpha | / | 0.579 | |
| 2yeg | XQG | Heat shock protein HSP 90-alpha | / | 0.564 | |
| 3hyz | 42C | Heat shock protein HSP 90-alpha | / | 0.564 | |
| 2yec | XQ0 | Heat shock protein HSP 90-alpha | / | 0.560 | |
| 3k97 | 4CD | Heat shock protein HSP 90-alpha | / | 0.553 | |
| 4ipe | ANP | TNF receptor-associated protein 1 | / | 0.553 | |
| 2wi5 | ZZ5 | Heat shock protein HSP 90-alpha | / | 0.551 | |
| 4egh | 0OY | Heat shock protein HSP 90-alpha | / | 0.551 | |
| 2bz5 | AB4 | Heat shock protein HSP 90-alpha | / | 0.550 | |
| 2uwd | 2GG | Heat shock protein HSP 90-alpha | / | 0.544 | |
| 2wi6 | ZZ6 | Heat shock protein HSP 90-alpha | / | 0.543 | |
| 3t10 | ACP | Heat shock protein HSP 90-alpha | / | 0.541 | |
| 3vha | VHA | Heat shock protein HSP 90-alpha | / | 0.541 | |
| 3d0b | SNX | Heat shock protein HSP 90-alpha | / | 0.539 | |
| 1yc4 | 43P | Heat shock protein HSP 90-alpha | / | 0.534 | |
| 3r4p | FU7 | Heat shock protein HSP 90-alpha | / | 0.533 | |
| 2vci | 2GJ | Heat shock protein HSP 90-alpha | / | 0.532 | |
| 4xcl | AGS | Heat shock cognate 90 kDa protein | / | 0.530 | |
| 2yi7 | BZ8 | Heat shock protein HSP 90-alpha | / | 0.529 | |
| 3hhu | 819 | Heat shock protein HSP 90-alpha | / | 0.526 | |
| 4jql | VJ6 | Heat shock protein HSP 90-alpha | / | 0.526 | |
| 4xcj | ADP | Heat shock cognate 90 kDa protein | / | 0.526 | |
| 3inx | JZC | Heat shock protein HSP 90-alpha | / | 0.524 | |
| 1uyk | PUX | Heat shock protein HSP 90-alpha | / | 0.522 | |
| 1yc1 | 4BC | Heat shock protein HSP 90-alpha | / | 0.522 | |
| 2bt0 | CT5 | Heat shock protein HSP 90-alpha | / | 0.522 | |
| 2vcj | 2EQ | Heat shock protein HSP 90-alpha | / | 0.522 | |
| 1yet | GDM | Heat shock protein HSP 90-alpha | / | 0.520 | |
| 2yi6 | 6QM | Heat shock protein HSP 90-alpha | / | 0.520 | |
| 2ye9 | 2D4 | Heat shock protein HSP 90-alpha | / | 0.519 | |
| 3r4o | FU3 | Heat shock protein HSP 90-alpha | / | 0.519 | |
| 2xd6 | XD6 | ATP-dependent molecular chaperone HSP82 | / | 0.517 | |
| 1qy8 | RDI | Endoplasmin | / | 0.515 | |
| 2wer | RDC | ATP-dependent molecular chaperone HSP82 | / | 0.513 | |
| 1u0z | RDC | Endoplasmin | / | 0.512 | |
| 1uy8 | PU5 | Heat shock protein HSP 90-alpha | / | 0.511 | |
| 2yee | 2EC | Heat shock protein HSP 90-alpha | / | 0.511 | |
| 4ce1 | 7FK | ATP-dependent molecular chaperone HSP82 | / | 0.510 | |
| 1osf | KOS | Heat shock protein HSP 90-alpha | / | 0.509 | |
| 2xhr | C0P | Heat shock protein HSP 90-alpha | / | 0.507 | |
| 2xk2 | ADP | Heat shock protein HSP 90-alpha | / | 0.507 | |
| 2xht | C0Y | Heat shock protein HSP 90-alpha | / | 0.506 | |
| 2o1v | ADP | Endoplasmin | / | 0.504 | |
| 2wi1 | ZZ2 | Heat shock protein HSP 90-alpha | / | 0.504 | |
| 2yjw | YJW | Heat shock protein HSP 90-alpha | / | 0.504 | |
| 2gqp | PA7 | Endoplasmin | / | 0.503 | |
| 2ye4 | 2FY | Heat shock protein HSP 90-alpha | / | 0.503 | |
| 3ekr | PY9 | Heat shock protein HSP 90-alpha | / | 0.502 | |
| 4awp | 99A | Heat shock protein HSP 90-alpha | / | 0.502 | |
| 2xjj | L81 | Heat shock protein HSP 90-alpha | / | 0.500 | |
| 2yej | ZZ3 | Heat shock protein HSP 90-alpha | / | 0.500 | |
| 4xdm | GDM | Heat shock cognate 90 kDa protein | / | 0.500 | |
| 2yej | XQK | Heat shock protein HSP 90-alpha | / | 0.499 | |
| 3eko | PYU | Heat shock protein HSP 90-alpha | / | 0.499 | |
| 3t2s | AGS | Heat shock protein HSP 90-alpha | / | 0.499 | |
| 1byq | ADP | Heat shock protein HSP 90-alpha | / | 0.498 | |
| 2cct | 2E1 | Heat shock protein HSP 90-alpha | / | 0.498 | |
| 3hek | BD0 | Heat shock protein HSP 90-alpha | / | 0.498 | |
| 4ivg | ANP | TNF receptor-associated protein 1 | / | 0.498 | |
| 2bre | KJ2 | ATP-dependent molecular chaperone HSP82 | / | 0.496 | |
| 2fwy | H64 | Heat shock protein HSP 90-alpha | / | 0.493 | |
| 2gfd | RDA | Endoplasmin | / | 0.493 | |
| 2xjx | XJX | Heat shock protein HSP 90-alpha | / | 0.490 | |
| 2xab | VHD | Heat shock protein HSP 90-alpha | / | 0.486 | |
| 2wi2 | ZZ3 | Heat shock protein HSP 90-alpha | / | 0.484 | |
| 4gqt | ADP | Heat shock protein 90 | / | 0.483 | |
| 5f5r | ANP | Heat shock protein 75 kDa, mitochondrial | / | 0.483 | |
| 2byh | 2D7 | Heat shock protein HSP 90-alpha | / | 0.482 | |
| 3opd | HIE | Heat shock protein 83 | / | 0.481 | |
| 2yef | ANP | Heat shock protein HSP 90-alpha | / | 0.479 | |
| 2yei | XQI | Heat shock protein HSP 90-alpha | / | 0.479 | |
| 2ccu | 2D9 | Heat shock protein HSP 90-alpha | / | 0.478 | |
| 3ft5 | MO8 | Heat shock protein HSP 90-alpha | / | 0.477 | |
| 3rlq | 3RQ | Heat shock protein HSP 90-alpha | / | 0.477 | |
| 3t1k | ANP | Heat shock protein HSP 90-alpha | / | 0.477 | |
| 3rlr | 3RR | Heat shock protein HSP 90-alpha | / | 0.476 | |
| 4asf | 62U | ATP-dependent molecular chaperone HSP82 | / | 0.475 | |
| 4b7p | 9UN | Heat shock protein HSP 90-alpha | / | 0.474 | |
| 4fcr | 0TM | Heat shock protein HSP 90-alpha | / | 0.474 | |
| 4fcq | 2N6 | Heat shock protein HSP 90-alpha | / | 0.473 | |
| 2fwz | H71 | Heat shock protein HSP 90-alpha | / | 0.470 | |
| 2wi7 | 2KL | Heat shock protein HSP 90-alpha | / | 0.470 | |
| 4awq | 592 | Heat shock protein HSP 90-alpha | / | 0.470 | |
| 3k99 | PFT | Heat shock protein HSP 90-alpha | / | 0.469 | |
| 3wha | WHA | Heat shock protein HSP 90-alpha | / | 0.469 | |
| 2xx2 | 13C | ATP-dependent molecular chaperone HSP82 | / | 0.468 | |
| 4eft | EFT | Heat shock protein HSP 90-alpha | / | 0.468 | |
| 4hy6 | FJ1 | Heat shock protein HSP 90-alpha | / | 0.465 | |
| 1yc3 | 4BC | Heat shock protein HSP 90-alpha | / | 0.464 | |
| 2byi | 2DD | Heat shock protein HSP 90-alpha | / | 0.461 | |
| 2qo9 | ANP | Ephrin type-A receptor 3 | 2.7.10.1 | 0.461 | |
| 3hz1 | 42C | Heat shock protein HSP 90-alpha | / | 0.461 | |
| 2ior | ADP | Chaperone protein HtpG | / | 0.460 | |
| 2iws | NP4 | ATP-dependent molecular chaperone HSP82 | / | 0.460 | |
| 4egi | B2J | Heat shock protein HSP 90-alpha | / | 0.460 | |
| 3inw | JZB | Heat shock protein HSP 90-alpha | / | 0.459 | |
| 1uy7 | PU4 | Heat shock protein HSP 90-alpha | / | 0.458 | |
| 1bgq | RDC | ATP-dependent molecular chaperone HSP82 | / | 0.457 | |
| 2o1u | ANP | Endoplasmin | / | 0.457 | |
| 1u2o | NEC | Endoplasmin | / | 0.451 | |
| 1uyh | PU0 | Heat shock protein HSP 90-alpha | / | 0.450 | |
| 2wxv | WXV | Cyclin-dependent kinase 2 | 2.7.11.22 | 0.450 | |
| 2ykj | YKJ | Heat shock protein HSP 90-alpha | / | 0.449 | |
| 1uyi | PUZ | Heat shock protein HSP 90-alpha | / | 0.448 | |
| 3ft8 | MOJ | Heat shock protein HSP 90-alpha | / | 0.447 | |
| 3hz1 | 37D | Heat shock protein HSP 90-alpha | / | 0.447 | |
| 3o0i | P54 | Heat shock protein HSP 90-alpha | / | 0.447 | |
| 4qmz | B49 | Serine/threonine-protein kinase 24 | 2.7.11.1 | 0.445 | |
| 2xcm | ADP | Cytosolic heat shock protein 90 | / | 0.444 | |
| 2y6o | 1N1 | Ephrin type-A receptor 4 | 2.7.10.1 | 0.443 | |
| 3peh | IBD | Endoplasmin homolog, putative | / | 0.443 | |
| 3qdd | 94M | Heat shock protein HSP 90-alpha | / | 0.443 | |
| 4ft0 | HK9 | Serine/threonine-protein kinase Chk1 | 2.7.11.1 | 0.443 | |
| 2wi4 | ZZ4 | Heat shock protein HSP 90-alpha | / | 0.442 | |
| 4bqg | 50Q | Heat shock protein HSP 90-alpha | / | 0.442 | |
| 1ai9 | NDP | Dihydrofolate reductase | 1.5.1.3 | 0.441 | |
| 2hg1 | N5O | Endoplasmin | / | 0.441 | |
| 1iol | EST | Estradiol 17-beta-dehydrogenase 1 | 1.1.1.62 | 0.440 | |
| 2esa | GDM | Endoplasmin | / | 0.440 |