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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Cavity similarities measured by Shaper
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Cavities are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299

Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
3nhrRZWRibosyldihydronicotinamide dehydrogenase [quinone]

Complex with similar cavities

PDB ID HET Uniprot Name EC Number Cavity
Similarity		 Align
3nhrRZWRibosyldihydronicotinamide dehydrogenase [quinone]/1.000
3gamMXXRibosyldihydronicotinamide dehydrogenase [quinone]/0.625
3nhfVVVRibosyldihydronicotinamide dehydrogenase [quinone]/0.587
4gr9372Ribosyldihydronicotinamide dehydrogenase [quinone]/0.577
4qohSTLRibosyldihydronicotinamide dehydrogenase [quinone]/0.574
3ox34X4Ribosyldihydronicotinamide dehydrogenase [quinone]/0.563
1sg0STLRibosyldihydronicotinamide dehydrogenase [quinone]/0.551
3nhkVAPRibosyldihydronicotinamide dehydrogenase [quinone]/0.548
3nhlYTRRibosyldihydronicotinamide dehydrogenase [quinone]/0.548
3nhpHGZRibosyldihydronicotinamide dehydrogenase [quinone]/0.541
3uxe465Ribosyldihydronicotinamide dehydrogenase [quinone]/0.537
3nfrEWQRibosyldihydronicotinamide dehydrogenase [quinone]/0.532
3owxXRARibosyldihydronicotinamide dehydrogenase [quinone]/0.531
4fgj1PQRibosyldihydronicotinamide dehydrogenase [quinone]/0.527
2qmzLDPRibosyldihydronicotinamide dehydrogenase [quinone]/0.526
2bzsCB1Ribosyldihydronicotinamide dehydrogenase [quinone]/0.516
4zvmDM2Ribosyldihydronicotinamide dehydrogenase [quinone]/0.514
3ox1695Ribosyldihydronicotinamide dehydrogenase [quinone]/0.502
1qr2FADRibosyldihydronicotinamide dehydrogenase [quinone]/0.497
1xi2CB1Ribosyldihydronicotinamide dehydrogenase [quinone]/0.484
4zvnFADRibosyldihydronicotinamide dehydrogenase [quinone]/0.477
3ox279XRibosyldihydronicotinamide dehydrogenase [quinone]/0.475
3o73O73Ribosyldihydronicotinamide dehydrogenase [quinone]/0.474
1zx1CB1Ribosyldihydronicotinamide dehydrogenase [quinone]/0.471
3g5mFADRibosyldihydronicotinamide dehydrogenase [quinone]/0.468
4zvlFADRibosyldihydronicotinamide dehydrogenase [quinone]/0.468
3nhjA2ZRibosyldihydronicotinamide dehydrogenase [quinone]/0.461
2qmyFADRibosyldihydronicotinamide dehydrogenase [quinone]/0.449
3nhwZXZRibosyldihydronicotinamide dehydrogenase [quinone]/0.445
3uxhUXHRibosyldihydronicotinamide dehydrogenase [quinone]/0.445