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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Cavity similarities measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Cavities are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299

Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
3nhlYTRRibosyldihydronicotinamide dehydrogenase [quinone]

Complex with similar cavities

PDB ID HET Uniprot Name EC Number Cavity
Similarity		 Align
3nhlYTRRibosyldihydronicotinamide dehydrogenase [quinone]/1.000
3nhkVAPRibosyldihydronicotinamide dehydrogenase [quinone]/0.700
3nhfVVVRibosyldihydronicotinamide dehydrogenase [quinone]/0.650
4zvmDM2Ribosyldihydronicotinamide dehydrogenase [quinone]/0.641
3ox34X4Ribosyldihydronicotinamide dehydrogenase [quinone]/0.635
4qohSTLRibosyldihydronicotinamide dehydrogenase [quinone]/0.623
2qmzLDPRibosyldihydronicotinamide dehydrogenase [quinone]/0.621
3nhrRZWRibosyldihydronicotinamide dehydrogenase [quinone]/0.620
1sg0STLRibosyldihydronicotinamide dehydrogenase [quinone]/0.611
2bzsCB1Ribosyldihydronicotinamide dehydrogenase [quinone]/0.609
3nhpHGZRibosyldihydronicotinamide dehydrogenase [quinone]/0.607
3nhjA2ZRibosyldihydronicotinamide dehydrogenase [quinone]/0.601
4gqiM49Ribosyldihydronicotinamide dehydrogenase [quinone]/0.587
3uxhUXHRibosyldihydronicotinamide dehydrogenase [quinone]/0.581
4gr9372Ribosyldihydronicotinamide dehydrogenase [quinone]/0.580
3nfrEWQRibosyldihydronicotinamide dehydrogenase [quinone]/0.569
3ox1695Ribosyldihydronicotinamide dehydrogenase [quinone]/0.565
3uxe465Ribosyldihydronicotinamide dehydrogenase [quinone]/0.557
4fgj1PQRibosyldihydronicotinamide dehydrogenase [quinone]/0.553
3nhwZXZRibosyldihydronicotinamide dehydrogenase [quinone]/0.552
3gamMXXRibosyldihydronicotinamide dehydrogenase [quinone]/0.541
4zvnFADRibosyldihydronicotinamide dehydrogenase [quinone]/0.541
3ox279XRibosyldihydronicotinamide dehydrogenase [quinone]/0.537
3owxXRARibosyldihydronicotinamide dehydrogenase [quinone]/0.534
3o73O73Ribosyldihydronicotinamide dehydrogenase [quinone]/0.523
4zvlFADRibosyldihydronicotinamide dehydrogenase [quinone]/0.523
1zx1CB1Ribosyldihydronicotinamide dehydrogenase [quinone]/0.515
1xi2CB1Ribosyldihydronicotinamide dehydrogenase [quinone]/0.512
3g5mFADRibosyldihydronicotinamide dehydrogenase [quinone]/0.510
3nhyA7BRibosyldihydronicotinamide dehydrogenase [quinone]/0.505
3nhuM42Ribosyldihydronicotinamide dehydrogenase [quinone]/0.486
2qmyFADRibosyldihydronicotinamide dehydrogenase [quinone]/0.483
4qoeFADRibosyldihydronicotinamide dehydrogenase [quinone]/0.481
4qofFMNRibosyldihydronicotinamide dehydrogenase [quinone]/0.481