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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Cavity similarities measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Cavities are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299

Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
3nfrEWQRibosyldihydronicotinamide dehydrogenase [quinone]

Complex with similar cavities

PDB ID HET Uniprot Name EC Number Cavity
Similarity		 Align
3nfrEWQRibosyldihydronicotinamide dehydrogenase [quinone]/1.000
3nhpHGZRibosyldihydronicotinamide dehydrogenase [quinone]/0.758
4gr9372Ribosyldihydronicotinamide dehydrogenase [quinone]/0.683
3uxe465Ribosyldihydronicotinamide dehydrogenase [quinone]/0.673
4qohSTLRibosyldihydronicotinamide dehydrogenase [quinone]/0.588
3nhfVVVRibosyldihydronicotinamide dehydrogenase [quinone]/0.563
3nhrRZWRibosyldihydronicotinamide dehydrogenase [quinone]/0.562
3gamMXXRibosyldihydronicotinamide dehydrogenase [quinone]/0.558
3ox279XRibosyldihydronicotinamide dehydrogenase [quinone]/0.558
3nhkVAPRibosyldihydronicotinamide dehydrogenase [quinone]/0.555
3ox34X4Ribosyldihydronicotinamide dehydrogenase [quinone]/0.550
2qmzLDPRibosyldihydronicotinamide dehydrogenase [quinone]/0.537
1sg0STLRibosyldihydronicotinamide dehydrogenase [quinone]/0.534
3owxXRARibosyldihydronicotinamide dehydrogenase [quinone]/0.525
3nhlYTRRibosyldihydronicotinamide dehydrogenase [quinone]/0.519
4zvmDM2Ribosyldihydronicotinamide dehydrogenase [quinone]/0.518
4zvnFADRibosyldihydronicotinamide dehydrogenase [quinone]/0.515
2bzsCB1Ribosyldihydronicotinamide dehydrogenase [quinone]/0.514
4fgj1PQRibosyldihydronicotinamide dehydrogenase [quinone]/0.505
1xi2CB1Ribosyldihydronicotinamide dehydrogenase [quinone]/0.500
3o73O73Ribosyldihydronicotinamide dehydrogenase [quinone]/0.500
2qmyFADRibosyldihydronicotinamide dehydrogenase [quinone]/0.495
3ox1695Ribosyldihydronicotinamide dehydrogenase [quinone]/0.493
1qr2FADRibosyldihydronicotinamide dehydrogenase [quinone]/0.491
3nhyA7BRibosyldihydronicotinamide dehydrogenase [quinone]/0.491
3nhwZXZRibosyldihydronicotinamide dehydrogenase [quinone]/0.486
3g5mFADRibosyldihydronicotinamide dehydrogenase [quinone]/0.485
3nhuM42Ribosyldihydronicotinamide dehydrogenase [quinone]/0.484
4zvlFADRibosyldihydronicotinamide dehydrogenase [quinone]/0.484
1zx1CB1Ribosyldihydronicotinamide dehydrogenase [quinone]/0.482
3nhjA2ZRibosyldihydronicotinamide dehydrogenase [quinone]/0.482
3uxhUXHRibosyldihydronicotinamide dehydrogenase [quinone]/0.475
4gqiM49Ribosyldihydronicotinamide dehydrogenase [quinone]/0.467
4qoeFADRibosyldihydronicotinamide dehydrogenase [quinone]/0.457