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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Cavity similarities measured by Shaper
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Cavities are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299

Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
2r3mSCXCyclin-dependent kinase 22.7.11.22

Complex with similar cavities

PDB ID HET Uniprot Name EC Number Cavity
Similarity		 Align
2r3mSCXCyclin-dependent kinase 22.7.11.221.000
2r3p3SCCyclin-dependent kinase 22.7.11.220.677
2vtpLZ9Cyclin-dependent kinase 22.7.11.220.589
2r3jSCJCyclin-dependent kinase 22.7.11.220.584
3r7yZ04Cyclin-dependent kinase 22.7.11.220.573
3lfsA07Cyclin-dependent kinase 22.7.11.220.566
2r3iSCFCyclin-dependent kinase 22.7.11.220.563
2r3r6SCCyclin-dependent kinase 22.7.11.220.555
2a0cCK9Cyclin-dependent kinase 22.7.11.220.548
1ykr628Cyclin-dependent kinase 22.7.11.220.547
4fkt48KCyclin-dependent kinase 22.7.11.220.545
2btrU73Cyclin-dependent kinase 22.7.11.220.543
2r3kSCQCyclin-dependent kinase 22.7.11.220.541
3lfnA27Cyclin-dependent kinase 22.7.11.220.541
2r3q5SCCyclin-dependent kinase 22.7.11.220.540
3rahO1ZCyclin-dependent kinase 22.7.11.220.534
2c6iDT1Cyclin-dependent kinase 22.7.11.220.533
3fz1B98Cyclin-dependent kinase 22.7.11.220.533
3r1yX76Cyclin-dependent kinase 22.7.11.220.532
1pxoCK7Cyclin-dependent kinase 22.7.11.220.529
1b39ATPCyclin-dependent kinase 22.7.11.220.528
3r7vZ02Cyclin-dependent kinase 22.7.11.220.527
2r3o2SCCyclin-dependent kinase 22.7.11.220.526
3r83Z14Cyclin-dependent kinase 22.7.11.220.526
3ezrEZRCyclin-dependent kinase 22.7.11.220.524
4fklCK2Cyclin-dependent kinase 22.7.11.220.523
1pxmCK5Cyclin-dependent kinase 22.7.11.220.519
4fki09KCyclin-dependent kinase 22.7.11.220.519
3lfqA28Cyclin-dependent kinase 22.7.11.220.517
3r9nZ68Cyclin-dependent kinase 22.7.11.220.517
2r3lSCWCyclin-dependent kinase 22.7.11.220.514
2r3fSC8Cyclin-dependent kinase 22.7.11.220.512
3iggEFQCyclin-dependent kinase 22.7.11.220.512
1ke5LS1Cyclin-dependent kinase 22.7.11.220.508
3r7uX96Cyclin-dependent kinase 22.7.11.220.508
3ezvEZVCyclin-dependent kinase 22.7.11.220.506
3r8lZ30Cyclin-dependent kinase 22.7.11.220.505
2c6o4SPCyclin-dependent kinase 22.7.11.220.503
1gii1PUCyclin-dependent kinase 22.7.11.220.502
3rm719ZCyclin-dependent kinase 22.7.11.220.500
4ek816KCyclin-dependent kinase 22.7.11.220.500
4fkq42KCyclin-dependent kinase 22.7.11.220.499
1oitHDTCyclin-dependent kinase 22.7.11.220.493
3qqlX03Cyclin-dependent kinase 22.7.11.220.493
3s1h56ZCyclin-dependent kinase 22.7.11.220.492
2vtjLZ4Cyclin-dependent kinase 22.7.11.220.491
3qxoX65Cyclin-dependent kinase 22.7.11.220.489
4fkpLS5Cyclin-dependent kinase 22.7.11.220.488
2c6lDT4Cyclin-dependent kinase 22.7.11.220.487
2vthLZ2Cyclin-dependent kinase 22.7.11.220.486
1w0xOLOCyclin-dependent kinase 22.7.11.220.485
3rm618ZCyclin-dependent kinase 22.7.11.220.484
4acm7YGCyclin-dependent kinase 22.7.11.220.484
2a4lRRCCyclin-dependent kinase 22.7.11.220.481
3qzgX67Cyclin-dependent kinase 22.7.11.220.481
1w8cN69Cyclin-dependent kinase 22.7.11.220.480
4fks46KCyclin-dependent kinase 22.7.11.220.480
3rak03ZCyclin-dependent kinase 22.7.11.220.479
2uzoC62Cyclin-dependent kinase 22.7.11.220.478
2vtiLZ3Cyclin-dependent kinase 22.7.11.220.477
3qwjX6ACyclin-dependent kinase 22.7.11.220.476
3sw719KCyclin-dependent kinase 22.7.11.220.476
3r7iX9ICyclin-dependent kinase 22.7.11.220.475
2w06FRVCyclin-dependent kinase 22.7.11.220.473
2c69CT8Cyclin-dependent kinase 22.7.11.220.472
3qruX19Cyclin-dependent kinase 22.7.11.220.472
2fvdLIACyclin-dependent kinase 22.7.11.220.471
3qxpX64Cyclin-dependent kinase 22.7.11.220.467
1p2a5BNCyclin-dependent kinase 22.7.11.220.466
3s2pPMUCyclin-dependent kinase 22.7.11.220.466
1pxpCK8Cyclin-dependent kinase 22.7.11.220.465
2b53D23Cyclin-dependent kinase 22.7.11.220.465
4ek610KCyclin-dependent kinase 22.7.11.220.465
2btsU32Cyclin-dependent kinase 22.7.11.220.464
2exmZIPCyclin-dependent kinase 22.7.11.220.461
3r1sX73Cyclin-dependent kinase 22.7.11.220.461
4nj32KDCyclin-dependent kinase 22.7.11.220.461
3rpv26ZCyclin-dependent kinase 22.7.11.220.459
3r8pZ46Cyclin-dependent kinase 22.7.11.220.455
2vu3LZECyclin-dependent kinase 22.7.11.220.454
3sqq99ZCyclin-dependent kinase 22.7.11.220.454
3wblPDYCyclin-dependent kinase 22.7.11.220.454
3pj8404Cyclin-dependent kinase 22.7.11.220.452
3qqhX0ACyclin-dependent kinase 22.7.11.220.452
4bcmT7ZCyclin-dependent kinase 22.7.11.220.452
2vv9IM9Cyclin-dependent kinase 22.7.11.220.451
3ig7EFPCyclin-dependent kinase 22.7.11.220.451
2xmyCDKCyclin-dependent kinase 22.7.11.220.450
3my5RFZCyclin-dependent kinase 22.7.11.220.449
3rni21ZCyclin-dependent kinase 22.7.11.220.449
1b38ATPCyclin-dependent kinase 22.7.11.220.448
1oirHDYCyclin-dependent kinase 22.7.11.220.448
3r8vZ62Cyclin-dependent kinase 22.7.11.220.448
3raiX85Cyclin-dependent kinase 22.7.11.220.448
1gih1PUCyclin-dependent kinase 22.7.11.220.447
1h0vUN4Cyclin-dependent kinase 22.7.11.220.447
1v1k3FPCyclin-dependent kinase 22.7.11.220.447
3pxyJWSCyclin-dependent kinase 22.7.11.220.447
3qtsX46Cyclin-dependent kinase 22.7.11.220.447
2vtoLZ8Cyclin-dependent kinase 22.7.11.220.446
2uznC96Cyclin-dependent kinase 22.7.11.220.445
1qmzATPCyclin-dependent kinase 22.7.11.220.444
2r3gSC9Cyclin-dependent kinase 22.7.11.220.444
1ke7LS3Cyclin-dependent kinase 22.7.11.220.443
3rjc06ZCyclin-dependent kinase 22.7.11.220.442
4kd11QKCyclin-dependent kinase 22.7.11.220.441
3qtuX44Cyclin-dependent kinase 22.7.11.220.440