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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Cavity similarities measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Cavities are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299

Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
2bzsCB1Ribosyldihydronicotinamide dehydrogenase [quinone]

Complex with similar cavities

PDB ID HET Uniprot Name EC Number Cavity
Similarity		 Align
2bzsCB1Ribosyldihydronicotinamide dehydrogenase [quinone]/1.000
2qmzLDPRibosyldihydronicotinamide dehydrogenase [quinone]/0.640
3ox34X4Ribosyldihydronicotinamide dehydrogenase [quinone]/0.617
3nhfVVVRibosyldihydronicotinamide dehydrogenase [quinone]/0.613
3nhkVAPRibosyldihydronicotinamide dehydrogenase [quinone]/0.613
3uxe465Ribosyldihydronicotinamide dehydrogenase [quinone]/0.603
4zvmDM2Ribosyldihydronicotinamide dehydrogenase [quinone]/0.596
3nhlYTRRibosyldihydronicotinamide dehydrogenase [quinone]/0.595
4qohSTLRibosyldihydronicotinamide dehydrogenase [quinone]/0.595
1zx1CB1Ribosyldihydronicotinamide dehydrogenase [quinone]/0.587
3nhpHGZRibosyldihydronicotinamide dehydrogenase [quinone]/0.575
3nhrRZWRibosyldihydronicotinamide dehydrogenase [quinone]/0.575
1sg0STLRibosyldihydronicotinamide dehydrogenase [quinone]/0.574
3nfrEWQRibosyldihydronicotinamide dehydrogenase [quinone]/0.574
3uxhUXHRibosyldihydronicotinamide dehydrogenase [quinone]/0.571
3ox1695Ribosyldihydronicotinamide dehydrogenase [quinone]/0.566
3nhyA7BRibosyldihydronicotinamide dehydrogenase [quinone]/0.559
4gqiM49Ribosyldihydronicotinamide dehydrogenase [quinone]/0.559
1qr2FADRibosyldihydronicotinamide dehydrogenase [quinone]/0.556
3nhwZXZRibosyldihydronicotinamide dehydrogenase [quinone]/0.555
4gr9372Ribosyldihydronicotinamide dehydrogenase [quinone]/0.551
3nhjA2ZRibosyldihydronicotinamide dehydrogenase [quinone]/0.550
3g5mFADRibosyldihydronicotinamide dehydrogenase [quinone]/0.547
4zvnFADRibosyldihydronicotinamide dehydrogenase [quinone]/0.545
4fgj1PQRibosyldihydronicotinamide dehydrogenase [quinone]/0.532
3nhuM42Ribosyldihydronicotinamide dehydrogenase [quinone]/0.530
3o73O73Ribosyldihydronicotinamide dehydrogenase [quinone]/0.530
3owxXRARibosyldihydronicotinamide dehydrogenase [quinone]/0.530
3gamMXXRibosyldihydronicotinamide dehydrogenase [quinone]/0.528
4zvlFADRibosyldihydronicotinamide dehydrogenase [quinone]/0.515
3ox279XRibosyldihydronicotinamide dehydrogenase [quinone]/0.503
4qoeFADRibosyldihydronicotinamide dehydrogenase [quinone]/0.494
2qmyFADRibosyldihydronicotinamide dehydrogenase [quinone]/0.474
4qofFMNRibosyldihydronicotinamide dehydrogenase [quinone]/0.473
1xi2CB1Ribosyldihydronicotinamide dehydrogenase [quinone]/0.469
1gg5E09NAD(P)H dehydrogenase [quinone] 11.6.5.20.440