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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Cavity similarities measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Cavities are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299

Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
1xi2CB1Ribosyldihydronicotinamide dehydrogenase [quinone]

Complex with similar cavities

PDB ID HET Uniprot Name EC Number Cavity
Similarity		 Align
1xi2CB1Ribosyldihydronicotinamide dehydrogenase [quinone]/1.000
3owxXRARibosyldihydronicotinamide dehydrogenase [quinone]/0.629
3nhpHGZRibosyldihydronicotinamide dehydrogenase [quinone]/0.610
4gr9372Ribosyldihydronicotinamide dehydrogenase [quinone]/0.606
3ox279XRibosyldihydronicotinamide dehydrogenase [quinone]/0.592
1sg0STLRibosyldihydronicotinamide dehydrogenase [quinone]/0.586
3nhrRZWRibosyldihydronicotinamide dehydrogenase [quinone]/0.585
3ox34X4Ribosyldihydronicotinamide dehydrogenase [quinone]/0.585
4fgj1PQRibosyldihydronicotinamide dehydrogenase [quinone]/0.583
3o73O73Ribosyldihydronicotinamide dehydrogenase [quinone]/0.579
4qohSTLRibosyldihydronicotinamide dehydrogenase [quinone]/0.572
3nfrEWQRibosyldihydronicotinamide dehydrogenase [quinone]/0.571
3nhjA2ZRibosyldihydronicotinamide dehydrogenase [quinone]/0.562
3nhfVVVRibosyldihydronicotinamide dehydrogenase [quinone]/0.557
4zvmDM2Ribosyldihydronicotinamide dehydrogenase [quinone]/0.556
3ox1695Ribosyldihydronicotinamide dehydrogenase [quinone]/0.552
3nhlYTRRibosyldihydronicotinamide dehydrogenase [quinone]/0.545
3nhwZXZRibosyldihydronicotinamide dehydrogenase [quinone]/0.540
3nhyA7BRibosyldihydronicotinamide dehydrogenase [quinone]/0.535
3uxhUXHRibosyldihydronicotinamide dehydrogenase [quinone]/0.531
3gamMXXRibosyldihydronicotinamide dehydrogenase [quinone]/0.525
3nhkVAPRibosyldihydronicotinamide dehydrogenase [quinone]/0.525
4gqiM49Ribosyldihydronicotinamide dehydrogenase [quinone]/0.506
2qmzLDPRibosyldihydronicotinamide dehydrogenase [quinone]/0.504
3nhuM42Ribosyldihydronicotinamide dehydrogenase [quinone]/0.491
2qmyFADRibosyldihydronicotinamide dehydrogenase [quinone]/0.487
3uxe465Ribosyldihydronicotinamide dehydrogenase [quinone]/0.479
2bzsCB1Ribosyldihydronicotinamide dehydrogenase [quinone]/0.464
1zx1CB1Ribosyldihydronicotinamide dehydrogenase [quinone]/0.455
3dopNAP3-oxo-5-beta-steroid 4-dehydrogenase/0.440