Logo scPDB

sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

Logo CNRS Logo Unistra
Distribution of Binding site similarity measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Binding Sites are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299
Binding Sites are considered as similar when the similarity value is greater than 0.44

Reference Protein Data Bank Entry :
PDB IDHETUniprot NameEC Number
4gr9372Ribosyldihydronicotinamide dehydrogenase [quinone]

Complex with similar binding sites

PDB ID HET Uniprot Name EC Number Binding Site
Similarity		 Align
4gr9372Ribosyldihydronicotinamide dehydrogenase [quinone]/1.000
3nfrEWQRibosyldihydronicotinamide dehydrogenase [quinone]/0.696
3nhpHGZRibosyldihydronicotinamide dehydrogenase [quinone]/0.695
3nhrRZWRibosyldihydronicotinamide dehydrogenase [quinone]/0.631
3ox34X4Ribosyldihydronicotinamide dehydrogenase [quinone]/0.630
3owxXRARibosyldihydronicotinamide dehydrogenase [quinone]/0.628
4fgj1PQRibosyldihydronicotinamide dehydrogenase [quinone]/0.628
3nhfVVVRibosyldihydronicotinamide dehydrogenase [quinone]/0.607
3ox279XRibosyldihydronicotinamide dehydrogenase [quinone]/0.602
3o73O73Ribosyldihydronicotinamide dehydrogenase [quinone]/0.595
3ox1695Ribosyldihydronicotinamide dehydrogenase [quinone]/0.594
1xi2CB1Ribosyldihydronicotinamide dehydrogenase [quinone]/0.592
3nhkVAPRibosyldihydronicotinamide dehydrogenase [quinone]/0.591
4zvmDM2Ribosyldihydronicotinamide dehydrogenase [quinone]/0.588
3nhjA2ZRibosyldihydronicotinamide dehydrogenase [quinone]/0.582
3uxe465Ribosyldihydronicotinamide dehydrogenase [quinone]/0.579
3nhyA7BRibosyldihydronicotinamide dehydrogenase [quinone]/0.572
3uxhUXHRibosyldihydronicotinamide dehydrogenase [quinone]/0.570
3nhlYTRRibosyldihydronicotinamide dehydrogenase [quinone]/0.568
2bzsCB1Ribosyldihydronicotinamide dehydrogenase [quinone]/0.564
4gqiM49Ribosyldihydronicotinamide dehydrogenase [quinone]/0.560
4qohSTLRibosyldihydronicotinamide dehydrogenase [quinone]/0.553
1sg0STLRibosyldihydronicotinamide dehydrogenase [quinone]/0.552
2qmzLDPRibosyldihydronicotinamide dehydrogenase [quinone]/0.529
3gamMXXRibosyldihydronicotinamide dehydrogenase [quinone]/0.526
3nhwZXZRibosyldihydronicotinamide dehydrogenase [quinone]/0.511
3nhuM42Ribosyldihydronicotinamide dehydrogenase [quinone]/0.506
1zx1CB1Ribosyldihydronicotinamide dehydrogenase [quinone]/0.499
1qr2FADRibosyldihydronicotinamide dehydrogenase [quinone]/0.459
3g5mFADRibosyldihydronicotinamide dehydrogenase [quinone]/0.456
1amoFMNNADPH--cytochrome P450 reductase/0.450
4zvnFADRibosyldihydronicotinamide dehydrogenase [quinone]/0.450
3p3zP3ZPutative cytochrome P450/0.441
2y46MIVMycinamicin IV hydroxylase/epoxidase/0.440