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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Binding site similarity measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Binding Sites are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299
Binding Sites are considered as similar when the similarity value is greater than 0.44

Reference Protein Data Bank Entry :
PDB IDHETUniprot NameEC Number
4d03FADPhenylacetone monooxygenase1.14.13.92

Complex with similar binding sites

PDB ID HET Uniprot Name EC Number Binding Site
Similarity		 Align
4d03FADPhenylacetone monooxygenase1.14.13.921.000
2ylrFADPhenylacetone monooxygenase1.14.13.920.733
2ylxFADPhenylacetone monooxygenase1.14.13.920.666
2ym2FADPhenylacetone monooxygenase1.14.13.920.654
4d04FADPhenylacetone monooxygenase1.14.13.920.631
2ylsFADPhenylacetone monooxygenase1.14.13.920.621
2yltFADPhenylacetone monooxygenase1.14.13.920.612
2ylwFADPhenylacetone monooxygenase1.14.13.920.601
2ylzFADPhenylacetone monooxygenase1.14.13.920.582
1w4xFADPhenylacetone monooxygenase1.14.13.920.554
3uozFAD2-oxo-Delta(3)-4,5,5-trimethylcyclopentenylacetyl-CoA monooxygenase1.14.13.1600.517
4u8iFDAUDP-galactopyranose mutase/0.480
4opiFDAConserved Archaeal protein/0.478
4c7kNAPCorticosteroid 11-beta-dehydrogenase isozyme 11.1.1.1460.474
3uklFADUDP-galactopyranose mutase/0.470
3up4FAD2-oxo-Delta(3)-4,5,5-trimethylcyclopentenylacetyl-CoA monooxygenase1.14.13.1600.468
1k4qFADGlutathione reductase, mitochondrial1.8.1.70.467
3kybFADUDP-galactopyranose mutase5.4.99.90.467
4opgFDAConserved Archaeal protein/0.466
2gh5FADGlutathione reductase, mitochondrial1.8.1.70.461
1grbFADGlutathione reductase, mitochondrial1.8.1.70.457
1grhFADGlutathione reductase, mitochondrial1.8.1.70.456
1graFADGlutathione reductase, mitochondrial1.8.1.70.454
3cic316Beta-secretase 13.4.23.460.454
5dp2NAPCurF/0.452
3djgFADGlutathione reductase, mitochondrial1.8.1.70.451
3b70NAPEnoyl reductase LovC10.448
4bc7FADAlkyldihydroxyacetonephosphate synthase, peroxisomal2.5.1.260.448
2r9zFADGlutathione amide reductase/0.447
5jscFADPutative acyl-CoA dehydrogenase/0.447
1npvL27Gag-Pol polyprotein3.4.23.160.446
2rbeNDPCorticosteroid 11-beta-dehydrogenase isozyme 11.1.1.1460.446
3g49NAPCorticosteroid 11-beta-dehydrogenase isozyme 11.1.1.1460.446
4ntdFADThioredoxin reductase/0.445
1udyFADMedium-chain specific acyl-CoA dehydrogenase, mitochondrial1.3.8.70.444
2ebaFADPutative glutaryl-CoA dehydrogenase/0.444
2rabFADGlutathione amide reductase/0.444
1grgFADGlutathione reductase, mitochondrial1.8.1.70.443
2qo5CHDFatty acid-binding protein 10-A, liver basic/0.443
3djjFADGlutathione reductase, mitochondrial1.8.1.70.443
3grsFADGlutathione reductase, mitochondrial1.8.1.70.443
3ig6438Urokinase-type plasminogen activator3.4.21.730.443
1egdFADMedium-chain specific acyl-CoA dehydrogenase, mitochondrial1.3.8.70.442
2cmjNAPIsocitrate dehydrogenase [NADP] cytoplasmic1.1.1.420.442
3dgzFADThioredoxin reductase 2, mitochondrial1.8.1.90.442
4nwzFADFAD-dependent pyridine nucleotide-disulfide oxidoreductase/0.442
2c0cNAPProstaglandin reductase 310.441
2c12FADNitroalkane oxidase1.7.3.10.441
3s1dZIRCytokinin dehydrogenase 11.5.99.120.441
4bbyFADAlkyldihydroxyacetonephosphate synthase, peroxisomal2.5.1.260.441