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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Binding site similarity measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Binding Sites are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299
Binding Sites are considered as similar when the similarity value is greater than 0.44

Reference Protein Data Bank Entry :
PDB IDHETUniprot NameEC Number
3qc9ADPRhodopsin kinase

Complex with similar binding sites

PDB ID HET Uniprot Name EC Number Binding Site
Similarity		 Align
3qc9ADPRhodopsin kinase/1.000
3c4wATPRhodopsin kinase/0.682
3c4zADPRhodopsin kinase/0.632
3c4xATPRhodopsin kinase/0.613
4deeADPAurora kinase A2.7.11.10.526
5dnrATPAurora kinase A2.7.11.10.523
4qnyANPMitogen activated protein kinase, putative/0.520
5dosATPAurora kinase A2.7.11.10.520
4l9i8PRRhodopsin kinase/0.511
3c50ADPRhodopsin kinase/0.502
4yhjAN2G protein-coupled receptor kinase 42.7.11.160.502
4i3zADPCyclin-dependent kinase 22.7.11.220.499
4c3pACPAurora kinase A2.7.11.10.496
1jkkANPDeath-associated protein kinase 12.7.11.10.491
1j1cADPGlycogen synthase kinase-3 beta2.7.11.260.488
3t8oATPRhodopsin kinase/0.488
2j0lANPFocal adhesion kinase 12.7.10.20.486
4ysjADPCalmodulin-like domain protein kinase/0.484
4qmlANPSerine/threonine-protein kinase 242.7.11.10.481
4fg7ATPCalcium/calmodulin-dependent protein kinase type 12.7.11.170.480
5l8lADPAurora kinase A2.7.11.10.480
3p23ADPSerine/threonine-protein kinase/endoribonuclease IRE12.7.11.10.478
2w4jADPDeath-associated protein kinase 12.7.11.10.476
3i5zZ48Mitogen-activated protein kinase 12.7.11.240.476
2henADPEphrin type-B receptor 22.7.10.10.475
2yaaATPDeath-associated protein kinase 2/0.474
4bfmANPMaternal embryonic leucine zipper kinase2.7.11.10.474
2qoqANPEphrin type-A receptor 32.7.10.10.472
4jboWPHAurora kinase A2.7.11.10.471
1ad5ANPTyrosine-protein kinase HCK2.7.10.20.470
2wqeADPAurora kinase A2.7.11.10.470
4jbpYPHAurora kinase A2.7.11.10.470
1ig1ANPDeath-associated protein kinase 12.7.11.10.469
3i60E86Mitogen-activated protein kinase 12.7.11.240.469
4r8qADPMitotic checkpoint serine/threonine-protein kinase BUB12.7.11.10.466
4ii5ADPCyclin-dependent kinase 22.7.11.220.465
1ny3ADPMAP kinase-activated protein kinase 22.7.11.10.464
3qd03Q43-phosphoinositide-dependent protein kinase 12.7.11.10.461
4xlvACPInsulin receptor2.7.10.10.461
2ijmATPFocal adhesion kinase 12.7.10.20.460
4pl4ADPSerine/threonine-protein kinase/endoribonuclease IRE12.7.11.10.460
2acxANPG protein-coupled receptor kinase 62.7.11.160.456
4fg9ATPCalcium/calmodulin-dependent protein kinase type 12.7.11.170.456
4bl1ANPMaternal embryonic leucine zipper kinase2.7.11.10.455
4fl3ANPTyrosine-protein kinase SYK2.7.10.20.455
3gu7ADPDeath-associated protein kinase 12.7.11.10.454
3nszANPCasein kinase II subunit alpha2.7.11.10.453
3orpAGSSerine/threonine protein kinase/0.453
3zxtACPDeath-associated protein kinase 12.7.11.10.453
2qo7ANPEphrin type-A receptor 32.7.10.10.450
4fg8ATPCalcium/calmodulin-dependent protein kinase type 12.7.11.170.449
5eg3ACPFibroblast growth factor receptor 2/0.449
1jnkANPMitogen-activated protein kinase 102.7.11.240.448
2c6eHPMAurora kinase A2.7.11.10.448
4jrnANPRhoptry kinase family protein/0.448
1mruAGSSerine/threonine-protein kinase PknB2.7.11.10.447
4fv2EK5Mitogen-activated protein kinase 12.7.11.240.447
1xr1ANPSerine/threonine-protein kinase pim-12.7.11.10.446
4ic7ANPMitogen-activated protein kinase 72.7.11.240.445
3bu5ATPInsulin receptor2.7.10.10.444
4gt3ATPMitogen-activated protein kinase 12.7.11.240.444
1dayGNPCasein kinase II subunit alpha2.7.11.10.443
4bbfO19Tyrosine-protein kinase JAK2/0.443
2cjmATPCyclin-dependent kinase 22.7.11.220.441
2ojj82AMitogen-activated protein kinase 12.7.11.240.441
4eooATPCyclin-dependent kinase 22.7.11.220.441
1qmzATPCyclin-dependent kinase 22.7.11.220.440
3dqwAGSProto-oncogene tyrosine-protein kinase Src2.7.10.20.440
4aw0ATP3-phosphoinositide-dependent protein kinase 12.7.11.10.440
5dmzADPMitotic checkpoint serine/threonine-protein kinase BUB12.7.11.10.440