2.020 Å
X-ray
2008-07-09
| Name: | Proto-oncogene tyrosine-protein kinase Src |
|---|---|
| ID: | SRC_CHICK |
| AC: | P00523 |
| Organism: | Gallus gallus |
| Reign: | Eukaryota |
| TaxID: | 9031 |
| EC Number: | 2.7.10.2 |
| Chain Name: | Percentage of Residues within binding site |
|---|---|
| C | 100 % |
| B-Factor: | 37.256 |
|---|---|
| Number of residues: | 36 |
| Including | |
| Standard Amino Acids: | 35 |
| Non Standard Amino Acids: | 1 |
| Water Molecules: | 0 |
| Cofactors: | |
| Metals: | MG |
| Ligandability | Volume (Å3) |
|---|---|
| 1.098 | 1208.250 |
| % Hydrophobic | % Polar |
|---|---|
| 49.72 | 50.28 |
| According to VolSite | |

| HET Code: | AGS |
|---|---|
| Formula: | C10H14N5O12P3S |
| Molecular weight: | 521.231 g/mol |
| DrugBank ID: | DB02930 |
| Buried Surface Area: | 53.78 % |
| Polar Surface area: | 329.24 Å2 |
| Number of | |
|---|---|
| H-Bond Acceptors: | 17 |
| H-Bond Donors: | 5 |
| Rings: | 3 |
| Aromatic rings: | 2 |
| Anionic atoms: | 2 |
| Cationic atoms: | 0 |
| Rule of Five Violation: | 2 |
| Rotatable Bonds: | 8 |
| X | Y | Z |
|---|---|---|
| -23.053 | -3.27755 | 14.9152 |
Image generated by PoseView
Represent the protein/ligand binding mode, centered on the ligand
Dashed lines represents hydrogen bonds and metal interactions
Green residue labels for amino acids with hydrophobic contacts (green lines) to the ligand
| Ligand | Protein | Interaction | |||
|---|---|---|---|---|---|
| Atom | Atom | Residue | Distance (Å) | Angle (°) | Type |
| O1B | MG | MG- 3 | 2.6 | 0 | Metal Acceptor |
| C1' | CB | LEU- 273 | 4.02 | 0 | Hydrophobic |
| C5' | CG2 | VAL- 281 | 4.24 | 0 | Hydrophobic |
| C1' | CG1 | VAL- 281 | 4.43 | 0 | Hydrophobic |
| O2A | NZ | LYS- 295 | 3.41 | 154.39 | H-Bond (Protein Donor) |
| O2A | NZ | LYS- 295 | 3.41 | 0 | Ionic (Protein Cationic) |
| N6 | O | GLU- 339 | 2.76 | 158.66 | H-Bond (Ligand Donor) |
| N1 | N | MET- 341 | 2.9 | 172.18 | H-Bond (Protein Donor) |
| C3' | CB | SER- 345 | 4.31 | 0 | Hydrophobic |
| O1A | OD1 | ASP- 404 | 3.44 | 136.06 | H-Bond (Protein Donor) |
| O2A | OD1 | ASP- 404 | 2.55 | 153.65 | H-Bond (Protein Donor) |