2.700 Å
X-ray
2011-01-15
| Name: | Rhodopsin kinase |
|---|---|
| ID: | RK_BOVIN |
| AC: | P28327 |
| Organism: | Bos taurus |
| Reign: | Eukaryota |
| TaxID: | 9913 |
| EC Number: | / |
| Chain Name: | Percentage of Residues within binding site |
|---|---|
| A | 100 % |
| B-Factor: | 46.453 |
|---|---|
| Number of residues: | 30 |
| Including | |
| Standard Amino Acids: | 28 |
| Non Standard Amino Acids: | 2 |
| Water Molecules: | 0 |
| Cofactors: | |
| Metals: | MG MG |
| Ligandability | Volume (Å3) |
|---|---|
| 0.489 | 725.625 |
| % Hydrophobic | % Polar |
|---|---|
| 48.37 | 51.63 |
| According to VolSite | |

| HET Code: | ADP |
|---|---|
| Formula: | C10H12N5O10P2 |
| Molecular weight: | 424.177 g/mol |
| DrugBank ID: | - |
| Buried Surface Area: | 56.71 % |
| Polar Surface area: | 260.7 Å2 |
| Number of | |
|---|---|
| H-Bond Acceptors: | 14 |
| H-Bond Donors: | 3 |
| Rings: | 3 |
| Aromatic rings: | 2 |
| Anionic atoms: | 3 |
| Cationic atoms: | 0 |
| Rule of Five Violation: | 1 |
| Rotatable Bonds: | 6 |
| X | Y | Z |
|---|---|---|
| -42.3119 | -8.47919 | 59.4271 |
Image generated by PoseView
Represent the protein/ligand binding mode, centered on the ligand
Dashed lines represents hydrogen bonds and metal interactions
Green residue labels for amino acids with hydrophobic contacts (green lines) to the ligand
| Ligand | Protein | Interaction | |||
|---|---|---|---|---|---|
| Atom | Atom | Residue | Distance (Å) | Angle (°) | Type |
| O1B | N | GLY- 197 | 2.95 | 126.37 | H-Bond (Protein Donor) |
| C1' | CB | VAL- 201 | 4.24 | 0 | Hydrophobic |
| C5' | CG2 | VAL- 201 | 4.08 | 0 | Hydrophobic |
| O2B | NZ | LYS- 216 | 3.19 | 148.37 | H-Bond (Protein Donor) |
| O1A | NZ | LYS- 216 | 2.79 | 136.56 | H-Bond (Protein Donor) |
| O2B | NZ | LYS- 216 | 3.19 | 0 | Ionic (Protein Cationic) |
| O1A | NZ | LYS- 216 | 2.79 | 0 | Ionic (Protein Cationic) |
| N6 | O | THR- 265 | 2.97 | 162.69 | H-Bond (Ligand Donor) |
| N1 | N | MET- 267 | 3.08 | 151.15 | H-Bond (Protein Donor) |
| O3B | MG | MG- 800 | 2.37 | 0 | Metal Acceptor |
| O2A | MG | MG- 800 | 2.46 | 0 | Metal Acceptor |
| O2B | MG | MG- 801 | 2.6 | 0 | Metal Acceptor |