2.700 Å
X-ray
2008-01-30
| Name: | Rhodopsin kinase |
|---|---|
| ID: | RK_BOVIN |
| AC: | P28327 |
| Organism: | Bos taurus |
| Reign: | Eukaryota |
| TaxID: | 9913 |
| EC Number: | / |
| Chain Name: | Percentage of Residues within binding site |
|---|---|
| B | 100 % |
| B-Factor: | 21.898 |
|---|---|
| Number of residues: | 34 |
| Including | |
| Standard Amino Acids: | 32 |
| Non Standard Amino Acids: | 2 |
| Water Molecules: | 0 |
| Cofactors: | |
| Metals: | MG MG |
| Ligandability | Volume (Å3) |
|---|---|
| 0.802 | 847.125 |
| % Hydrophobic | % Polar |
|---|---|
| 47.41 | 52.59 |
| According to VolSite | |

| HET Code: | ATP |
|---|---|
| Formula: | C10H12N5O13P3 |
| Molecular weight: | 503.149 g/mol |
| DrugBank ID: | DB00171 |
| Buried Surface Area: | 50.8 % |
| Polar Surface area: | 319.88 Å2 |
| Number of | |
|---|---|
| H-Bond Acceptors: | 17 |
| H-Bond Donors: | 3 |
| Rings: | 3 |
| Aromatic rings: | 2 |
| Anionic atoms: | 4 |
| Cationic atoms: | 0 |
| Rule of Five Violation: | 2 |
| Rotatable Bonds: | 8 |
| X | Y | Z |
|---|---|---|
| -107.353 | 53.8179 | -52.1836 |
Image generated by PoseView
Represent the protein/ligand binding mode, centered on the ligand
Dashed lines represents hydrogen bonds and metal interactions
Green residue labels for amino acids with hydrophobic contacts (green lines) to the ligand
| Ligand | Protein | Interaction | |||
|---|---|---|---|---|---|
| Atom | Atom | Residue | Distance (Å) | Angle (°) | Type |
| O1B | N | GLY- 197 | 2.75 | 152.62 | H-Bond (Protein Donor) |
| C1' | CG2 | VAL- 201 | 4.15 | 0 | Hydrophobic |
| C5' | CG2 | VAL- 201 | 4.11 | 0 | Hydrophobic |
| O2B | NZ | LYS- 216 | 2.85 | 169.77 | H-Bond (Protein Donor) |
| O1A | NZ | LYS- 216 | 2.52 | 134.18 | H-Bond (Protein Donor) |
| O2B | NZ | LYS- 216 | 2.85 | 0 | Ionic (Protein Cationic) |
| O1A | NZ | LYS- 216 | 2.52 | 0 | Ionic (Protein Cationic) |
| N6 | O | THR- 265 | 2.81 | 156.8 | H-Bond (Ligand Donor) |
| N1 | N | MET- 267 | 3.03 | 154.8 | H-Bond (Protein Donor) |
| O2A | MG | MG- 563 | 2.25 | 0 | Metal Acceptor |
| O2G | MG | MG- 564 | 2.75 | 0 | Metal Acceptor |
| O2B | MG | MG- 564 | 2.35 | 0 | Metal Acceptor |