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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Cavity similarities measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Cavities are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299

Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
3c4wATPRhodopsin kinase

Complex with similar cavities

PDB ID HET Uniprot Name EC Number Cavity
Similarity		 Align
3c4wATPRhodopsin kinase/1.000
3c4zADPRhodopsin kinase/0.616
3qc9ADPRhodopsin kinase/0.572
3c4xATPRhodopsin kinase/0.563
4l9i8PRRhodopsin kinase/0.522
4qnyANPMitogen activated protein kinase, putative/0.468
4yhjAN2G protein-coupled receptor kinase 42.7.11.160.451
3t8oATPRhodopsin kinase/0.448
5dnrATPAurora kinase A2.7.11.10.448
2j0lANPFocal adhesion kinase 12.7.10.20.443