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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Binding site similarity measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Binding Sites are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299
Binding Sites are considered as similar when the similarity value is greater than 0.44

Reference Protein Data Bank Entry :
PDB IDHETUniprot NameEC Number
1xi2CB1Ribosyldihydronicotinamide dehydrogenase [quinone]

Complex with similar binding sites

PDB ID HET Uniprot Name EC Number Binding Site
Similarity		 Align
1xi2CB1Ribosyldihydronicotinamide dehydrogenase [quinone]/1.000
3owxXRARibosyldihydronicotinamide dehydrogenase [quinone]/0.640
3nhpHGZRibosyldihydronicotinamide dehydrogenase [quinone]/0.624
4gr9372Ribosyldihydronicotinamide dehydrogenase [quinone]/0.608
3nhrRZWRibosyldihydronicotinamide dehydrogenase [quinone]/0.596
3ox279XRibosyldihydronicotinamide dehydrogenase [quinone]/0.590
3ox34X4Ribosyldihydronicotinamide dehydrogenase [quinone]/0.590
4fgj1PQRibosyldihydronicotinamide dehydrogenase [quinone]/0.589
3nfrEWQRibosyldihydronicotinamide dehydrogenase [quinone]/0.588
3o73O73Ribosyldihydronicotinamide dehydrogenase [quinone]/0.584
4qohSTLRibosyldihydronicotinamide dehydrogenase [quinone]/0.569
1sg0STLRibosyldihydronicotinamide dehydrogenase [quinone]/0.562
3nhfVVVRibosyldihydronicotinamide dehydrogenase [quinone]/0.562
3nhjA2ZRibosyldihydronicotinamide dehydrogenase [quinone]/0.551
3ox1695Ribosyldihydronicotinamide dehydrogenase [quinone]/0.550
3gamMXXRibosyldihydronicotinamide dehydrogenase [quinone]/0.548
4zvmDM2Ribosyldihydronicotinamide dehydrogenase [quinone]/0.548
3nhlYTRRibosyldihydronicotinamide dehydrogenase [quinone]/0.546
3nhyA7BRibosyldihydronicotinamide dehydrogenase [quinone]/0.529
3nhkVAPRibosyldihydronicotinamide dehydrogenase [quinone]/0.526
3uxhUXHRibosyldihydronicotinamide dehydrogenase [quinone]/0.518
2qmzLDPRibosyldihydronicotinamide dehydrogenase [quinone]/0.499
3nhuM42Ribosyldihydronicotinamide dehydrogenase [quinone]/0.494
4gqiM49Ribosyldihydronicotinamide dehydrogenase [quinone]/0.494
3uxe465Ribosyldihydronicotinamide dehydrogenase [quinone]/0.492
3nhwZXZRibosyldihydronicotinamide dehydrogenase [quinone]/0.482
2bzsCB1Ribosyldihydronicotinamide dehydrogenase [quinone]/0.471
1amoFMNNADPH--cytochrome P450 reductase/0.459
4a312CBGlycylpeptide N-tetradecanoyltransferase/0.459
1zx1CB1Ribosyldihydronicotinamide dehydrogenase [quinone]/0.456
1m13HYFNuclear receptor subfamily 1 group I member 2/0.440