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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Binding site similarity measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Binding Sites are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299
Binding Sites are considered as similar when the similarity value is greater than 0.44

Reference Protein Data Bank Entry :
PDB IDHETUniprot NameEC Number
1a9yUPGUDP-glucose 4-epimerase5.1.3.2

Complex with similar binding sites

PDB ID HET Uniprot Name EC Number Binding Site
Similarity		 Align
1a9yUPGUDP-glucose 4-epimerase5.1.3.21.000
1kvsUPGUDP-glucose 4-epimerase5.1.3.20.648
1a9zUPGUDP-glucose 4-epimerase5.1.3.20.610
1udbUFGUDP-glucose 4-epimerase5.1.3.20.607
1udcUFMUDP-glucose 4-epimerase5.1.3.20.593
1hzjUD1UDP-glucose 4-epimerase/0.573
1udaUFGUDP-glucose 4-epimerase5.1.3.20.568
1kvtUPGUDP-glucose 4-epimerase5.1.3.20.559
3enkUPGUDP-glucose 4-epimerase/0.524
2udpUPPUDP-glucose 4-epimerase5.1.3.20.520
1ek6UPGUDP-glucose 4-epimerase/0.514
1kvuUPGUDP-glucose 4-epimerase5.1.3.20.512
1lrjUD1UDP-glucose 4-epimerase5.1.3.20.502
1xelUPGUDP-glucose 4-epimerase5.1.3.20.499
5jscFADPutative acyl-CoA dehydrogenase/0.476
2oapANPType II secretion system protein (GspE-2)/0.469
4f4dCHDFerrochelatase, mitochondrial4.99.1.10.465
2vwqNAPGlucose 1-dehydrogenase/0.461
3em0CHDFatty acid-binding protein 6, ileal (gastrotropin)/0.453
3gwfNAPCyclohexanone monooxygenase/0.450
3kkzSAMUncharacterized protein/0.450
3o03NAPDehydrogenase with different specificities (Related to short-chain alcohol dehydrogenase)/0.450
2x7hPFNProstaglandin reductase 310.449
3dyqPCGHigh affinity cGMP-specific 3',5'-cyclic phosphodiesterase 9A/0.449
4egbNADdTDP-glucose 4,6-dehydratase/0.449
3junAKDPhenazine biosynthesis protein A/B/0.447
4eakATP5'-AMP-activated protein kinase subunit gamma-1/0.447
4i6gFADCryptochrome-2/0.447
2lfoGCHFatty acid-binding protein, liver/0.446
1xe55FEPlasmepsin-23.4.23.390.445
1cjvFOKAdenylate cyclase type 2/0.443
1cjvFOKAdenylate cyclase type 5/0.443
4j0v1H7Beta-secretase 13.4.23.460.443
4m4922YL-lactate dehydrogenase A chain1.1.1.270.443
1i3mUD1UDP-glucose 4-epimerase/0.442
2hunNAD336aa long hypothetical dTDP-glucose 4,6-dehydratase/0.442
3qt62P0Mevalonate diphosphate decarboxylase/0.441
4uwmFMN3,6-diketocamphane 1,6 monooxygenase1.14.130.441
3p62FMNPentaerythritol tetranitrate reductase/0.440
4g7gVFVLanosterol 14-alpha-demethylase/0.440