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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
5jsc FAD Putative acyl-CoA dehydrogenase

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
5jsc FADPutative acyl-CoA dehydrogenase / 1.572
1jqi FADShort-chain specific acyl-CoA dehydrogenase, mitochondrial / 1.040
2pg0 FADAcyl-CoA dehydrogenase / 1.015
1rx0 FADIsobutyryl-CoA dehydrogenase, mitochondrial 1.3.99 0.969
3pfd FDAAcyl-CoA dehydrogenase FadE25 / 0.961
4p13 FADMedium-chain specific acyl-CoA dehydrogenase, mitochondrial 1.3.8.7 0.955
4iv6 FDAIsovaleryl-CoA dehydrogenase / 0.954
3p4t FAOPutative acyl-CoA dehydrogenase / 0.950
2vig FADShort-chain specific acyl-CoA dehydrogenase, mitochondrial 1.3.8.1 0.947
3mdd FADMedium-chain specific acyl-CoA dehydrogenase, mitochondrial 1.3.8.7 0.946
3r7k FDAProbable acyl CoA dehydrogenase / 0.936
4m9a FDAAcyl-CoA dehydrogenase / 0.900
3nf4 FADAcyl-CoA dehydrogenase domain-containing protein / 0.898
5af7 FADAcyl-CoA dehydrogenase / 0.885
2ix5 FADAcyl-coenzyme A oxidase 4, peroxisomal 1.3.3.6 0.881
3sf6 FDAGlutaryl-CoA dehydrogenase / 0.881
1egd FADMedium-chain specific acyl-CoA dehydrogenase, mitochondrial 1.3.8.7 0.872
2eba FADPutative glutaryl-CoA dehydrogenase / 0.866
3oib FDAPutative acyl-CoA dehydrogenase / 0.844
3owa FADAcyl-CoA dehydrogenase / 0.836
5ahs FADAcyl-CoA dehydrogenase / 0.822
4y9l FADAcyl-CoA dehydrogenase family member 11 / 0.818
1ege FADMedium-chain specific acyl-CoA dehydrogenase, mitochondrial 1.3.8.7 0.815
1buc FADAcyl-CoA dehydrogenase, short-chain specific 1.3.8.1 0.814
2z1q FADAcyl-CoA dehydrogenase / 0.813
1t9g FADMedium-chain specific acyl-CoA dehydrogenase, mitochondrial 1.3.8.7 0.802
2a1t FADMedium-chain specific acyl-CoA dehydrogenase, mitochondrial 1.3.8.7 0.799
2dvl FADAcyl-CoA dehydrogenase / 0.798
1siq FADGlutaryl-CoA dehydrogenase, mitochondrial 1.3.8.6 0.797
2c12 FADNitroalkane oxidase 1.7.3.1 0.795
3u33 FADPutative acyl-CoA dehydrogenase AidB 1.3.99 0.793
3mpj FADGlutaryl-CoA dehydrogenase 1.3.99.32 0.784
1r2j FADFkbI / 0.779
2fon FADAcyl-coenzyme A oxidase / 0.771
3djl FADPutative acyl-CoA dehydrogenase AidB 1.3.99 0.763
4x28 FDAAcyl-CoA dehydrogenase FadE26 / 0.744
4x28 FDAAcyl-CoA dehydrogenase FadE27 / 0.744
3mpi FADGlutaryl-CoA dehydrogenase 1.3.99.32 0.721
4irn FADAnaB / 0.719
4ttc FMNIodotyrosine deiodinase 1 / 0.715
1u8v FAD4-hydroxybutyryl-CoA dehydratase/vinylacetyl-CoA-Delta-isomerase / 0.712
4qly FMNEnone reductase CLA-ER / 0.710
1udy FADMedium-chain specific acyl-CoA dehydrogenase, mitochondrial 1.3.8.7 0.704
2pr5 FMNBlue-light photoreceptor / 0.700
2reh FADNitroalkane oxidase 1.7.3.1 0.696
3qvr FADGlucose oxidase 1.1.3.4 0.696
1n07 FMNRiboflavin kinase 2.7.1.26 0.694
3gfd FMNIodotyrosine deiodinase 1 1.21.1.1 0.694
3mkh FADNitroalkane oxidase / 0.691
1dxq FADNAD(P)H dehydrogenase [quinone] 1 1.6.5.2 0.684
3ad9 FADSubunit beta of sarcosine oxidase / 0.680
1gg5 FADNAD(P)H dehydrogenase [quinone] 1 1.6.5.2 0.677
2gr3 FADFerredoxin reductase / 0.677
3e39 FMNNitroreductase / 0.677
2wzw FMNNitroreductase NfnB / 0.673
2iid FADL-amino-acid oxidase 1.4.3.2 0.672
4cw5 FMNDfnA / 0.672
1tdo FADL-amino-acid oxidase 1.4.3.2 0.671
1kbq FADNAD(P)H dehydrogenase [quinone] 1 1.6.5.2 0.670
2wzv FMNNitroreductase NfnB / 0.670
3hgo FMN12-oxophytodienoate reductase 3 1.3.1.42 0.670
2q3r FMN12-oxophytodienoate reductase 1 1.3.1.42 0.668
2q3o FMN12-oxophytodienoate reductase 3 1.3.1.42 0.667
2vxa RBFDodecin / 0.665
3w8w FADPutative FAD-dependent oxygenase EncM / 0.665
2gpj FADSiderophore-interacting protein / 0.663
2qmy FADRibosyldihydronicotinamide dehydrogenase [quinone] / 0.661
4kto FADPutative isovaleryl-CoA dehydrogenase protein / 0.661
4zvn FADRibosyldihydronicotinamide dehydrogenase [quinone] / 0.661
4tmb FMNOld yellow enzyme / 0.660
5a8a FMNRiboflavin biosynthesis protein RibF 2.7.1.26 0.660
5a89 FMNRiboflavin biosynthesis protein RibF 2.7.1.26 0.659
4eo3 FMNBacterioferritin comigratory protein/NADH dehydrogenase / 0.658
2gqw FADFerredoxin reductase / 0.657
3mzi FMNActivator of photopigment and puc expression / 0.657
1f8s FADL-amino-acid oxidase 1.4.3.2 0.656
1z6l FADPolyamine oxidase FMS1 / 0.655
2jb1 FADL-amino acid oxidase / 0.655
5j60 FADThioredoxin reductase / 0.655
1nb9 RBFRiboflavin kinase 2.7.1.26 0.653
2yvf FADFerredoxin reductase / 0.653
1gwj FMNMorphinone reductase / 0.652
2yr5 FADPhenylalanine 2-monooxygenase precursor 1.13.12.9 0.651
4h6r FDAProline dehydrogenase / 0.651
4hia FMNLOV protein / 0.651
2jk6 FADTrypanothione reductase / 0.650
4h4r FADBiphenyl dioxygenase ferredoxin reductase subunit / 0.650
4h4t FADBiphenyl dioxygenase ferredoxin reductase subunit / 0.650
4h4v FADBiphenyl dioxygenase ferredoxin reductase subunit / 0.650
5a4k FADNAD(P)H dehydrogenase [quinone] 1 1.6.5.2 0.650