sc-PDB
An Annotated Database of Druggable Binding Sites from the Protein DataBank
An Annotated Database of Druggable Binding Sites from the Protein DataBank
Binding Modes are compared using Grim.
For more information, please see the following publication:
Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65
| PDB ID | HET | Uniprot Name | EC Number |
|---|---|---|---|
| 4hmw | FMN | Pyridoxamine 5'-phosphate oxidase |
| PDB ID | HET | Uniprot Name | EC Number | Binding Mode Similarity |
Align |
|---|---|---|---|---|---|
| 4hmw | FMN | Pyridoxamine 5'-phosphate oxidase | / | 1.308 | |
| 4hmx | FMN | Pyridoxamine 5'-phosphate oxidase | / | 1.263 | |
| 4hms | FMN | Phenazine biosynthesis protein PhzG | 1.4 | 1.145 | |
| 1ty9 | FMN | Phenazine biosynthesis protein PhzG | 1.4 | 1.085 | |
| 2i51 | FMN | Pyridoxamine 5'-phosphate oxidase-related, FMN-binding | / | 0.949 | |
| 1wv4 | FMN | Pyridoxine/pyridoxamine 5'-phosphate oxidase | / | 0.933 | |
| 2ou5 | FMN | Pyridoxamine 5'-phosphate oxidase-related FMN-binding protein | / | 0.842 | |
| 1ci0 | FMN | Pyridoxamine 5'-phosphate oxidase | 1.4.3.5 | 0.808 | |
| 1i0s | FMN | Ferric-chelate reductase (NAD(P)H) | / | 0.747 | |
| 2i02 | FMN | Pyridoxamine 5'-phosphate oxidase-related, FMN-binding | / | 0.738 | |
| 2hq9 | FAD | Mll6688 protein | / | 0.725 | |
| 3in6 | FMN | Uncharacterized protein | / | 0.721 | |
| 4ybn | FAD | Flavin-nucleotide-binding protein | / | 0.719 | |
| 2a1u | FAD | Electron transfer flavoprotein subunit alpha, mitochondrial | / | 0.708 | |
| 3clr | FAD | Electron transfer flavoprotein subunit alpha | / | 0.707 | |
| 1efv | FAD | Electron transfer flavoprotein subunit alpha, mitochondrial | / | 0.703 | |
| 3r5w | F42 | Deazaflavin-dependent nitroreductase | / | 0.698 | |
| 2pia | FMN | Phthalate dioxygenase reductase | / | 0.693 | |
| 1qgz | FAD | Ferredoxin--NADP reductase | 1.18.1.2 | 0.692 | |
| 3e4v | FMN | Uncharacterized protein | / | 0.692 | |
| 1sm4 | FAD | Ferredoxin--NADP reductase | / | 0.689 | |
| 1i7p | FAD | NADH-cytochrome b5 reductase 3 | 1.6.2.2 | 0.687 | |
| 2e83 | FMN | FMN-binding protein | / | 0.687 | |
| 2xnc | FAD | Ferredoxin--NADP reductase, leaf isozyme, chloroplastic | 1.18.1.2 | 0.687 | |
| 1ep3 | FAD | Dihydroorotate dehydrogenase B (NAD(+)), electron transfer subunit | / | 0.686 | |
| 3qfc | FAD | NADPH--cytochrome P450 reductase | / | 0.683 | |
| 4f07 | FAD | Styrene monooxygenase component 2 | / | 0.683 | |
| 4kuo | RBF | Putative blue-light photoreceptor | / | 0.679 | |
| 2gj3 | FAD | Nitrogen fixation regulatory protein | 2.7.13.3 | 0.675 | |
| 3qe2 | FAD | NADPH--cytochrome P450 reductase | / | 0.675 | |
| 2bgi | FAD | NADPH:ferredoxin reductase | / | 0.673 | |
| 3gfy | FMN | Uncharacterized protein | / | 0.672 | |
| 1o97 | FAD | Electron transfer flavoprotein subunit alpha | / | 0.671 | |
| 3t50 | FMN | Blue-light-activated histidine kinase | 2.7.13.3 | 0.671 | |
| 4ylf | FAD | Dihydroorotate dehydrogenase B (NAD(+)), electron transfer subunit homolog | / | 0.671 | |
| 4e0h | FAD | Mitochondrial FAD-linked sulfhydryl oxidase ERV1 | 1.8.3.2 | 0.670 | |
| 4m5p | FMN | NADPH dehydrogenase | / | 0.670 | |
| 5cho | FAD | Flavin reductase | / | 0.670 | |
| 1gaq | FAD | Ferredoxin | / | 0.669 | |
| 3r5z | F42 | Uncharacterized protein | / | 0.669 | |
| 4eo3 | FMN | Bacterioferritin comigratory protein/NADH dehydrogenase | / | 0.668 | |
| 1djq | FMN | Trimethylamine dehydrogenase | 1.5.8.2 | 0.666 | |
| 1eje | FMN | Protein MTH_152 | / | 0.666 | |
| 3gfz | FMN | Uncharacterized protein | / | 0.666 | |
| 4fk8 | FAD | Ferredoxin--NADP reductase | / | 0.665 | |
| 4c3x | FAD | 3-ketosteroid dehydrogenase | / | 0.664 | |
| 3krf | IPE | Geranyl diphosphate synthase large subunit | / | 0.663 | |
| 3r5y | F42 | Uncharacterized protein | / | 0.662 | |
| 5j3w | FMN | Sensory box protein | / | 0.662 | |
| 4hhd | FMN | Phototropin-1 | 2.7.11.1 | 0.661 | |
| 3hdy | FDA | UDP-galactopyranose mutase | / | 0.659 | |
| 3p19 | NDP | Putative blue fluorescent protein | / | 0.658 | |
| 1g63 | FMN | Epidermin decarboxylase | 4.1.1 | 0.657 | |
| 3qfr | FAD | NADPH--cytochrome P450 reductase | / | 0.657 | |
| 4rhe | FMN | Flavin prenyltransferase UbiX | / | 0.657 | |
| 2pa7 | TYD | TDP-4-oxo-6-deoxy-alpha-D-glucose-3,4-oxoisomerase | 5.3.2.3 | 0.656 | |
| 2wzw | FMN | Nitroreductase NfnB | / | 0.656 | |
| 1ja1 | FAD | NADPH--cytochrome P450 reductase | / | 0.655 | |
| 2vnh | FAD | NADPH:ferredoxin reductase | / | 0.655 | |
| 1amo | FAD | NADPH--cytochrome P450 reductase | / | 0.654 | |
| 3vy2 | FMN | FMN-binding protein | / | 0.654 | |
| 1gjr | FAD | Ferredoxin--NADP reductase | 1.18.1.2 | 0.653 | |
| 2ptf | FMN | Uncharacterized protein MTH_863 | / | 0.653 | |
| 1w35 | FAD | Ferredoxin--NADP reductase | 1.18.1.2 | 0.652 | |
| 1qg0 | FAD | Ferredoxin--NADP reductase, leaf isozyme, chloroplastic | 1.18.1.2 | 0.650 |