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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
4fk8 FAD Ferredoxin--NADP reductase

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
4fk8 FADFerredoxin--NADP reductase / 1.365
2qdx FADFerredoxin--NADP+ reductase / 1.161
3crz FADFerredoxin--NADP+ reductase / 1.161
4b4d FADFerredoxin-NADP reductase / 1.110
2vnk FADNADPH:ferredoxin reductase / 1.108
2bgj FADNADPH:ferredoxin reductase / 1.106
2bgi FADNADPH:ferredoxin reductase / 1.018
2vnj FADNADPH:ferredoxin reductase / 0.987
2vnh FADNADPH:ferredoxin reductase / 0.984
4k1x FADNADPH:ferredoxin reductase / 0.972
1a8p FADFerredoxin--NADP reductase / 0.920
1fdr FADFerredoxin--NADP reductase 1.18.1.2 0.920
1cqx FADFlavohemoprotein / 0.893
3fpk FADFerredoxin-NADP reductase / 0.889
2eix FADNADH-cytochrome b5 reductase / 0.881
3w5h FADNADH-cytochrome b5 reductase 3 1.6.2.2 0.863
2pia FMNPhthalate dioxygenase reductase / 0.862
3w2e FADNADH-cytochrome b5 reductase 3 1.6.2.2 0.860
1krh FADBenzoate 1,2-dioxygenase electron transfer component 1.18.1.3 0.858
1ja1 FADNADPH--cytochrome P450 reductase / 0.849
1amo FADNADPH--cytochrome P450 reductase / 0.843
1umk FADNADH-cytochrome b5 reductase 3 1.6.2.2 0.841
2bf4 FADNADPH--cytochrome P450 reductase / 0.833
1qg0 FADFerredoxin--NADP reductase, leaf isozyme, chloroplastic 1.18.1.2 0.830
1j9z FADNADPH--cytochrome P450 reductase / 0.827
3qfs FADNADPH--cytochrome P450 reductase / 0.827
2bn4 FADNADPH--cytochrome P450 reductase / 0.825
4uaj FADNa(+)-translocating NADH-quinone reductase subunit F / 0.825
3qfc FADNADPH--cytochrome P450 reductase / 0.815
3w2f FADNADH-cytochrome b5 reductase 3 1.6.2.2 0.809
3qft FADNADPH--cytochrome P450 reductase / 0.808
4y9u FADNADPH--cytochrome P450 reductase / 0.801
1e63 FADFerredoxin--NADP reductase 1.18.1.2 0.791
1qh0 FADFerredoxin--NADP reductase 1.18.1.2 0.784
1gjr FADFerredoxin--NADP reductase 1.18.1.2 0.783
2b5o FADFerredoxin--NADP reductase 1.18.1.2 0.781
2rc6 FADFerredoxin--NADP reductase / 0.780
3qfr FADNADPH--cytochrome P450 reductase / 0.780
1h85 FADFerredoxin--NADP reductase 1.18.1.2 0.776
1gr1 FADFerredoxin--NADP reductase 1.18.1.2 0.771
1qgy FADFerredoxin--NADP reductase 1.18.1.2 0.769
4y9r FADNADPH--cytochrome P450 reductase / 0.769
2vyq FADFerredoxin--NADP reductase 1.18.1.2 0.756
4y7c FADNADPH--cytochrome P450 reductase / 0.754
4yao FADNADPH--cytochrome P450 reductase / 0.754
3qe2 FADNADPH--cytochrome P450 reductase / 0.753
4hms FMNPhenazine biosynthesis protein PhzG 1.4 0.752
1e64 FADFerredoxin--NADP reductase 1.18.1.2 0.747
3zc3 FADFerredoxin--NADP reductase 1.18.1.2 0.747
1que FADFerredoxin--NADP reductase 1.18.1.2 0.745
3e4v FMNUncharacterized protein / 0.744
1i0s FMNFerric-chelate reductase (NAD(P)H) / 0.742
2ok8 FADFerredoxin--NADP reductase, apicoplast / 0.740
5cho FADFlavin reductase / 0.740
1w34 FADFerredoxin--NADP reductase 1.18.1.2 0.739
2i51 FMNPyridoxamine 5'-phosphate oxidase-related, FMN-binding / 0.737
1bx1 FADFerredoxin--NADP reductase, chloroplastic 1.18.1.2 0.732
3ojx FADNADPH--cytochrome P450 reductase / 0.729
3ojw FADNADPH--cytochrome P450 reductase / 0.728
3bnk FMNFlavoredoxin / 0.725
3in6 FMNUncharacterized protein / 0.723
4bpr FADFerredoxin--NADP reductase 1.18.1.2 0.718
1gvh FADFlavohemoprotein / 0.717
2ok7 FADFerredoxin--NADP reductase, apicoplast / 0.715
4hmx FMNPyridoxamine 5'-phosphate oxidase / 0.710
2hq9 FADMll6688 protein / 0.706
1w87 FADFerredoxin--NADP reductase 1.18.1.2 0.705
4yaf FADNADPH--cytochrome P450 reductase / 0.704
1qx4 FADNADH-cytochrome b5 reductase 3 1.6.2.2 0.703
1fnb FADFerredoxin--NADP reductase, chloroplastic 1.18.1.2 0.700
4wqm FADToluene-4-monooxygenase electron transfer component 1.18.1.3 0.699
1cnf FADNitrate reductase [NADH] 1.7.1.1 0.697
1fnd FADFerredoxin--NADP reductase, chloroplastic 1.18.1.2 0.695
1n9l FMNPutative blue light receptor / 0.695
1n07 FMNRiboflavin kinase 2.7.1.26 0.694
3jqr FADFerredoxin--NADP reductase, apicoplast / 0.694
4f07 FADStyrene monooxygenase component 2 / 0.692
1eje FMNProtein MTH_152 / 0.691
1bx0 FADFerredoxin--NADP reductase, chloroplastic 1.18.1.2 0.690
2z6c FMNPhototropin-1 2.7.11.1 0.690
1fnc FDAFerredoxin--NADP reductase, chloroplastic 1.18.1.2 0.689
1ty9 FMNPhenazine biosynthesis protein PhzG 1.4 0.689
4af6 FADFerredoxin--NADP reductase, leaf isozyme, chloroplastic 1.18.1.2 0.688
1usc FMNMonooxygenase / 0.687
4hj4 FMNLOV protein / 0.686
4rhe FMNFlavin prenyltransferase UbiX / 0.686
4hj3 FMNLOV protein / 0.685
2ou5 FMNPyridoxamine 5'-phosphate oxidase-related FMN-binding protein / 0.684
2pr5 FMNBlue-light photoreceptor / 0.683
4hhd FMNPhototropin-1 2.7.11.1 0.679
1bjk FADFerredoxin--NADP reductase 1.18.1.2 0.677
1f20 FADNitric oxide synthase, brain 1.14.13.39 0.677
2bpo FADNADPH--cytochrome P450 reductase / 0.677
1tll FADNitric oxide synthase, brain 1.14.13.39 0.675
4yau FADNADPH--cytochrome P450 reductase / 0.675
3mhp FADFerredoxin--NADP reductase, leaf isozyme, chloroplastic 1.18.1.2 0.674
1flm FMNFMN-binding protein / 0.673
2nr4 FMNConserved protein / 0.673
1w35 FADFerredoxin--NADP reductase 1.18.1.2 0.672
1wv4 FMNPyridoxine/pyridoxamine 5'-phosphate oxidase / 0.672
1ja0 FADNADPH--cytochrome P450 reductase / 0.670
1s4m LUMRiboflavin biosynthesis protein / 0.670
3r5w F42Deazaflavin-dependent nitroreductase / 0.670
3vy2 FMNFMN-binding protein / 0.670
4hia FMNLOV protein / 0.668
1ib0 FADNADH-cytochrome b5 reductase 3 1.6.2.2 0.667
3a6r FMNFMN-binding protein / 0.666
3a20 FMNFMN-binding protein / 0.665
3a6q FMNFMN-binding protein / 0.665
3r5y F42Uncharacterized protein / 0.665
4eeu FMNPhototropin-2 2.7.11.1 0.665
4hmw FMNPyridoxamine 5'-phosphate oxidase / 0.665
4l82 FMNUncharacterized protein / 0.665
1rz1 FADPhenol 2-hydroxylase component B / 0.664
3t50 FMNBlue-light-activated histidine kinase 2.7.13.3 0.663
2e83 FMNFMN-binding protein / 0.662
4h6r FDAProline dehydrogenase / 0.662
2j09 FMNDeoxyribodipyrimidine photo-lyase 4.1.99.3 0.661
3vo2 FADFerredoxin--NADP reductase / 0.659
2gpj FADSiderophore-interacting protein / 0.658
3a3g DLZLumazine protein / 0.658
1rz0 FADPhenol 2-hydroxylase component B / 0.656
2o12 FMNChorismate synthase / 0.656
3w5u FADFerredoxin / 0.656
3r5z F42Uncharacterized protein / 0.655
3ue6 FMNAureochrome1 / 0.655
3clt FADElectron transfer flavoprotein subunit alpha / 0.654
1h42 FADFerredoxin--NADP reductase 1.18.1.2 0.653
3vy5 FMNFMN-binding protein / 0.653
2i02 FMNPyridoxamine 5'-phosphate oxidase-related, FMN-binding / 0.652
4ylf FADDihydroorotate dehydrogenase B (NAD(+)), electron transfer subunit homolog / 0.652
2rc5 FADFerredoxin--NADP reductase / 0.651
2ard FDAFlavin-dependent tryptophan halogenase PrnA 1.14.19.9 0.650