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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
3znc BZ1 Carbonic anhydrase 4 4.2.1.1

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
3znc BZ1Carbonic anhydrase 4 4.2.1.1 0.881
1g7u PEP2-dehydro-3-deoxyphosphooctonate aldolase 2.5.1.55 0.744
4m2v BZ1Carbonic anhydrase 2 4.2.1.1 0.726
3fw3 ETSCarbonic anhydrase 4 4.2.1.1 0.711
2weg FBVCarbonic anhydrase 2 4.2.1.1 0.708
2q1q OSPCarbonic anhydrase 2 4.2.1.1 0.704
4k13 ETSCarbonic anhydrase 2 4.2.1.1 0.702
3ml2 SU0Carbonic anhydrase 2 4.2.1.1 0.700
1i91 INQCarbonic anhydrase 2 4.2.1.1 0.699
1if4 FBSCarbonic anhydrase 2 4.2.1.1 0.699
4xiw AZMCarbonic anhydrase, alpha type / 0.699
3k2f NKXCarbonic anhydrase 2 4.2.1.1 0.698
1bnt AL2Carbonic anhydrase 2 4.2.1.1 0.697
4x5s AZMCarbonic anhydrase (Carbonate dehydratase) / 0.696
1bnu AL3Carbonic anhydrase 2 4.2.1.1 0.695
3dbu D8WCarbonic anhydrase 2 4.2.1.1 0.695
1bnm AL8Carbonic anhydrase 2 4.2.1.1 0.694
3mzc S6ICarbonic anhydrase 2 4.2.1.1 0.694
1cil ETSCarbonic anhydrase 2 4.2.1.1 0.693
1kwr SG2Carbonic anhydrase 2 4.2.1.1 0.693
4k0z MZMCarbonic anhydrase 2 4.2.1.1 0.691
4uov AZMCarbonate dehydratase / 0.691
1bn1 AL5Carbonic anhydrase 2 4.2.1.1 0.690
3oys OYSCarbonic anhydrase 2 4.2.1.1 0.690
4bf6 X0QCarbonic anhydrase 2 4.2.1.1 0.689
3igp DT7Carbonic anhydrase 2 4.2.1.1 0.687
3dc3 AZMCarbonic anhydrase 2 4.2.1.1 0.686
3v2j AZMCarbonic anhydrase 2 4.2.1.1 0.686
4lu3 AZMCarbonic anhydrase 14 4.2.1.1 0.686
1jd0 AZMCarbonic anhydrase 12 4.2.1.1 0.685
1rj6 AZMCarbonic anhydrase 14 4.2.1.1 0.685
3d8w D8WCarbonic anhydrase 2 4.2.1.1 0.685
1bn3 AL6Carbonic anhydrase 2 4.2.1.1 0.684
1i9n IOACarbonic anhydrase 2 4.2.1.1 0.684
3mdz EZLCarbonic anhydrase 7 4.2.1.1 0.684
3sax E50Carbonic anhydrase 2 4.2.1.1 0.684
2h4n AZMCarbonic anhydrase 2 4.2.1.1 0.683
1bzm MZMCarbonic anhydrase 1 4.2.1.1 0.682
2wej FB2Carbonic anhydrase 2 4.2.1.1 0.682
3dcw EZLCarbonic anhydrase 2 4.2.1.1 0.682
3dd0 EZLCarbonic anhydrase 2 4.2.1.1 0.682
4ito MPXCarbonic anhydrase 2 4.2.1.1 0.682
1if8 SBSCarbonic anhydrase 2 4.2.1.1 0.680
3dd8 2C7Carbonic anhydrase 2 4.2.1.1 0.678
3m2y BE0Carbonic anhydrase 2 4.2.1.1 0.677
3n2p AYXCarbonic anhydrase 2 4.2.1.1 0.677
1dmy AZMCarbonic anhydrase 5A, mitochondrial 4.2.1.1 0.676
1zsb AZMCarbonic anhydrase 2 4.2.1.1 0.676
3s9t E49Carbonic anhydrase 2 4.2.1.1 0.676
2weo FBWCarbonic anhydrase 2 4.2.1.1 0.675
3n4b WWZCarbonic anhydrase 2 4.2.1.1 0.675
3ffp LC1Carbonic anhydrase 2 4.2.1.1 0.673
2nmx M25Carbonic anhydrase 1 4.2.1.1 0.672
3m2n J74Carbonic anhydrase 2 4.2.1.1 0.672
2pow I7CCarbonic anhydrase 2 4.2.1.1 0.671
3d9z D9ZCarbonic anhydrase 2 4.2.1.1 0.671
3dcc D9ZCarbonic anhydrase 2 4.2.1.1 0.671
3kig DA4Carbonic anhydrase 2 4.2.1.1 0.671
4iwz 1GOCarbonic anhydrase 2 4.2.1.1 0.671
3m40 J45Carbonic anhydrase 2 4.2.1.1 0.670
4bf1 9FKCarbonic anhydrase 2 4.2.1.1 0.670
3m67 E36Carbonic anhydrase 2 4.2.1.1 0.669
3mhc ARZCarbonic anhydrase 2 4.2.1.1 0.669
3mna DWHCarbonic anhydrase 2 4.2.1.1 0.668
3mhi J90Carbonic anhydrase 2 4.2.1.1 0.667
3nb5 R21Carbonic anhydrase 2 4.2.1.1 0.667
3po6 DT9Carbonic anhydrase 2 4.2.1.1 0.667
3sbh E65Carbonic anhydrase 2 4.2.1.1 0.667
1kwq SG1Carbonic anhydrase 2 4.2.1.1 0.666
3s8x E59Carbonic anhydrase 2 4.2.1.1 0.666
4m2r BZ1Carbonic anhydrase 2 4.2.1.1 0.666
1xq0 4TRCarbonic anhydrase 2 4.2.1.1 0.665
3ni5 C1HCarbonic anhydrase 2 4.2.1.1 0.665
4k0t D9ZCarbonic anhydrase 2 4.2.1.1 0.665
1i90 INMCarbonic anhydrase 2 4.2.1.1 0.664
2nn7 M29Carbonic anhydrase 1 4.2.1.1 0.664
1bnw TPDCarbonic anhydrase 2 4.2.1.1 0.663
3m96 E38Carbonic anhydrase 2 4.2.1.1 0.663
3mhl J71Carbonic anhydrase 2 4.2.1.1 0.663
3sbi E90Carbonic anhydrase 2 4.2.1.1 0.663
1bnv AL7Carbonic anhydrase 2 4.2.1.1 0.662
1g1d FSBCarbonic anhydrase 2 4.2.1.1 0.662
3b4f TUOCarbonic anhydrase 2 4.2.1.1 0.662
1if6 FBUCarbonic anhydrase 2 4.2.1.1 0.661
3mmf D9HCarbonic anhydrase 2 4.2.1.1 0.661
3oyq OYQCarbonic anhydrase 2 4.2.1.1 0.661
1g52 F2BCarbonic anhydrase 2 4.2.1.1 0.660
4ht2 V50Carbonic anhydrase 12 4.2.1.1 0.658
1g4o BSBCarbonic anhydrase 2 4.2.1.1 0.657
1xpz 4TZCarbonic anhydrase 2 4.2.1.1 0.655
2weh FB1Carbonic anhydrase 2 4.2.1.1 0.655
4knn E1FCarbonic anhydrase 13 4.2.1.1 0.655
3mho J43Carbonic anhydrase 2 4.2.1.1 0.654
2h15 B19Carbonic anhydrase 2 4.2.1.1 0.653
4dz7 D02Carbonic anhydrase 2 4.2.1.1 0.653
3n3j WWVCarbonic anhydrase 2 4.2.1.1 0.651
4hu1 V13Carbonic anhydrase 13 4.2.1.1 0.651
3dcs MZMCarbonic anhydrase 2 4.2.1.1 0.650