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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
3u33 FAD Putative acyl-CoA dehydrogenase AidB 1.3.99

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
3u33 FADPutative acyl-CoA dehydrogenase AidB 1.3.99 1.494
3djl FADPutative acyl-CoA dehydrogenase AidB 1.3.99 1.172
4y9l FADAcyl-CoA dehydrogenase family member 11 / 0.909
3p4t FAOPutative acyl-CoA dehydrogenase / 0.903
2pg0 FADAcyl-CoA dehydrogenase / 0.898
3nf4 FADAcyl-CoA dehydrogenase domain-containing protein / 0.832
1egd FADMedium-chain specific acyl-CoA dehydrogenase, mitochondrial 1.3.8.7 0.819
2z1q FADAcyl-CoA dehydrogenase / 0.807
3sf6 FDAGlutaryl-CoA dehydrogenase / 0.800
1rx0 FADIsobutyryl-CoA dehydrogenase, mitochondrial 1.3.99 0.795
5jsc FADPutative acyl-CoA dehydrogenase / 0.793
1jqi FADShort-chain specific acyl-CoA dehydrogenase, mitochondrial / 0.792
4iv6 FDAIsovaleryl-CoA dehydrogenase / 0.790
3oib FDAPutative acyl-CoA dehydrogenase / 0.787
3mdd FADMedium-chain specific acyl-CoA dehydrogenase, mitochondrial 1.3.8.7 0.786
2ix5 FADAcyl-coenzyme A oxidase 4, peroxisomal 1.3.3.6 0.784
4m9a FDAAcyl-CoA dehydrogenase / 0.782
1ege FADMedium-chain specific acyl-CoA dehydrogenase, mitochondrial 1.3.8.7 0.777
5af7 FADAcyl-CoA dehydrogenase / 0.772
4p13 FADMedium-chain specific acyl-CoA dehydrogenase, mitochondrial 1.3.8.7 0.748
2vig FADShort-chain specific acyl-CoA dehydrogenase, mitochondrial 1.3.8.1 0.742
2eba FADPutative glutaryl-CoA dehydrogenase / 0.741
4x28 FDAAcyl-CoA dehydrogenase FadE26 / 0.730
4x28 FDAAcyl-CoA dehydrogenase FadE27 / 0.730
3pfd FDAAcyl-CoA dehydrogenase FadE25 / 0.729
2i51 FMNPyridoxamine 5'-phosphate oxidase-related, FMN-binding / 0.726
2wzv FMNNitroreductase NfnB / 0.723
2wzw FMNNitroreductase NfnB / 0.723
1buc FADAcyl-CoA dehydrogenase, short-chain specific 1.3.8.1 0.718
3gh8 FMNIodotyrosine deiodinase 1 1.21.1.1 0.718
4eo3 FMNBacterioferritin comigratory protein/NADH dehydrogenase / 0.718
3eo8 FMNPutative nitroreductase / 0.715
3ue6 FMNAureochrome1 / 0.715
3mpi FADGlutaryl-CoA dehydrogenase 1.3.99.32 0.714
1u8v FAD4-hydroxybutyryl-CoA dehydratase/vinylacetyl-CoA-Delta-isomerase / 0.706
3gfd FMNIodotyrosine deiodinase 1 1.21.1.1 0.701
1gg5 FADNAD(P)H dehydrogenase [quinone] 1 1.6.5.2 0.700
2d29 FADAcyl-CoA dehydrogenase / 0.699
3r7k FDAProbable acyl CoA dehydrogenase / 0.699
2zaf FADNitroalkane oxidase 1.7.3.1 0.695
3hj9 FMNUncharacterized protein / 0.694
1h69 FADNAD(P)H dehydrogenase [quinone] 1 1.6.5.2 0.692
3bem FMNPutative NAD(P)H nitroreductase MhqN 1 0.692
1icu FMNOxygen-insensitive NAD(P)H nitroreductase / 0.690
3hgo FMN12-oxophytodienoate reductase 3 1.3.1.42 0.685
4qly FMNEnone reductase CLA-ER / 0.685
5ahs FADAcyl-CoA dehydrogenase / 0.684
3pxv FMNNitroreductase / 0.682
1dxo FADNAD(P)H dehydrogenase [quinone] 1 1.6.5.2 0.679
2dvl FADAcyl-CoA dehydrogenase / 0.678
3mpj FADGlutaryl-CoA dehydrogenase 1.3.99.32 0.678
2hay FMNPutative NAD(P)H-flavin oxidoreductase / 0.677
4u2s FDACholesterol oxidase 1.1.3.6 0.675
3owa FADAcyl-CoA dehydrogenase / 0.673
2reh FADNitroalkane oxidase 1.7.3.1 0.672
3of4 FMNNitroreductase / 0.670
1jeh FADDihydrolipoyl dehydrogenase, mitochondrial 1.8.1.4 0.669
4mok FADPyranose 2-oxidase / 0.669
2a1t FADMedium-chain specific acyl-CoA dehydrogenase, mitochondrial 1.3.8.7 0.668
1ds7 FMNOxygen-insensitive NAD(P)H nitroreductase / 0.664
2yqu FADDihydrolipoyl dehydrogenase / 0.664
4irn FADAnaB / 0.664
2jk6 FADTrypanothione reductase / 0.663
4kuk RBFPutative blue-light photoreceptor / 0.662
2z6d FMNPhototropin-2 2.7.11.1 0.661
4kuo RBFPutative blue-light photoreceptor / 0.661
3ic9 FADPutative dihydrolipoamide dehydrogenase / 0.660
4rje FNRLactate oxidase / 0.660
4hhd FMNPhototropin-1 2.7.11.1 0.659
4xwr FADCholesterol oxidase 1.1.3.6 0.659
4opl FDAConserved Archaeal protein / 0.658
2wow FADTrypanothione reductase / 0.657
4opt FDAConserved Archaeal protein / 0.657
1ooq FMNOxygen-insensitive NAD(P)H nitroreductase / 0.656
3x21 FMNOxygen-insensitive NAD(P)H nitroreductase / 0.656
1icv FMNOxygen-insensitive NAD(P)H nitroreductase / 0.655
1oon FMNOxygen-insensitive NAD(P)H nitroreductase / 0.655
1pox FADPyruvate oxidase 1.2.3.3 0.655
3gdp FAD(R)-mandelonitrile lyase 2 4.1.2.10 0.654
3pl8 FADPyranose 2-oxidase / 0.654
1ju2 FAD(R)-mandelonitrile lyase 2 4.1.2.10 0.653
2yr5 FADPhenylalanine 2-monooxygenase precursor 1.13.12.9 0.651
2qae FADDihydrolipoyl dehydrogenase 1.8.1.4 0.650
3n0c FADFlavin-dependent thymidylate synthase 2.1.1.148 0.650