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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
3t2z FAD Sulfide-quinone reductase

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
3t2z FADSulfide-quinone reductase / 1.250
3t2k FADSulfide-quinone reductase / 1.096
3t14 FADSulfide-quinone reductase / 1.094
3syi FADSulfide-quinone reductase / 1.048
3sz0 FADSulfide-quinone reductase / 1.002
3kpk FADSulfide-quinone reductase / 0.995
3t2y FADSulfide-quinone reductase / 0.956
4hb9 FADUncharacterized protein / 0.771
2eq6 FADDihydrolipoyl dehydrogenase / 0.746
3lzw FADFerredoxin--NADP reductase 2 1.18.1.2 0.742
4h4p FADBiphenyl dioxygenase ferredoxin reductase subunit / 0.740
2yg3 FADPutrescine oxidase / 0.736
3rha FDAPutrescine oxidase / 0.734
1f3p FADFerredoxin reductase / 0.730
2gr0 FADFerredoxin reductase / 0.730
5fs8 FADApoptosis-inducing factor 1, mitochondrial 1.1.1 0.729
4jdr FADDihydrolipoyl dehydrogenase 1.8.1.4 0.726
5j60 FADThioredoxin reductase / 0.720
2yqu FADDihydrolipoyl dehydrogenase / 0.714
3uox FAD2-oxo-Delta(3)-4,5,5-trimethylcyclopentenylacetyl-CoA monooxygenase 1.14.13.160 0.714
3uth FDAUDP-galactopyranose mutase / 0.713
1zmc FADDihydrolipoyl dehydrogenase, mitochondrial 1.8.1.4 0.708
1cjc FADNADPH:adrenodoxin oxidoreductase, mitochondrial 1.18.1.6 0.704
2nvk FADThioredoxin reductase 1, mitochondrial 1.8.1.9 0.704
2xve FADPutative flavin-containing monooxygenase / 0.704
4jq9 FADDihydrolipoyl dehydrogenase / 0.702
4k2x FADPolyketide oxygenase/hydroxylase / 0.702
4b68 FADL-ornithine N(5)-monooxygenase / 0.701
3f8p NADNADH oxidase/thioredoxin reductase / 0.700
3f8r NAPNADH oxidase/thioredoxin reductase / 0.700
4bv6 FADApoptosis-inducing factor 1, mitochondrial 1.1.1 0.700
1wam FADUDP-galactopyranose mutase 5.4.99.9 0.698
1e6e FADNADPH:adrenodoxin oxidoreductase, mitochondrial 1.18.1.6 0.697
2yg6 FADPutrescine oxidase / 0.694
3cnt FADPolyamine oxidase FMS1 / 0.692
3fg2 FADPutative rubredoxin reductase / 0.692
4lii FADApoptosis-inducing factor 1, mitochondrial 1.1.1 0.692
4nzh FADL-ornithine N(5)-monooxygenase / 0.692
4u8n FDAUDP-galactopyranose mutase / 0.691
3uoy FAD2-oxo-Delta(3)-4,5,5-trimethylcyclopentenylacetyl-CoA monooxygenase 1.14.13.160 0.687
3urh FADDihydrolipoyl dehydrogenase / 0.686
1d7y FADFerredoxin reductase / 0.682
1joa FADNADH peroxidase 1.11.1.1 0.682
4hsu FADLysine-specific histone demethylase 1B 1 0.682
4u8l FDAUDP-galactopyranose mutase / 0.682
4u8o FDAUDP-galactopyranose mutase / 0.681
5cku FADL-ornithine N(5)-monooxygenase / 0.681
4wx1 FDAUDP-galactopyranose mutase / 0.678
2q0l FADThioredoxin reductase 1.8.1.9 0.677
3uoz FAD2-oxo-Delta(3)-4,5,5-trimethylcyclopentenylacetyl-CoA monooxygenase 1.14.13.160 0.677
4ocg FADFAD-dependent pyridine nucleotide-disulphide oxidoreductase / 0.677
4tlz FADKtzI / 0.677
3lxd FADFAD-dependent pyridine nucleotide-disulfide oxidoreductase / 0.676
4la1 FADThioredoxin glutathione reductase / 0.676
1mok FAD2-oxopropyl-CoM reductase, carboxylating 1.8.1.5 0.674
2fje FADAdenylylsulfate reductase, subunit A (AprA) / 0.674
3dh9 FADThioredoxin reductase 1, mitochondrial 1.8.1.9 0.674
4eqr FADCoenzyme A disulfide reductase / 0.674
1i8t FADUDP-galactopyranose mutase 5.4.99.9 0.673
2x8g FADThioredoxin glutathione reductase / 0.673
3nt6 FADFAD-dependent pyridine nucleotide-disulphide oxidoreductase / 0.672
4dsh FDAUncharacterized protein / 0.672
4tm0 FADKtzI / 0.672
3gwf FADCyclohexanone monooxygenase / 0.670
1m6i FADApoptosis-inducing factor 1, mitochondrial 1.1.1 0.669
2vou FAD2,6-dihydroxypyridine 3-monooxygenase 1.14.13.10 0.669
3uov FAD2-oxo-Delta(3)-4,5,5-trimethylcyclopentenylacetyl-CoA monooxygenase 1.14.13.160 0.669
2gqw FADFerredoxin reductase / 0.667
4cy8 FDA2-hydroxybiphenyl-3-monooxygenase / 0.667
1q1w FADPutidaredoxin reductase 1.18.1.5 0.666
2ylr FADPhenylacetone monooxygenase 1.14.13.92 0.665
3g5s FADMethylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase TrmFO / 0.665
2ard FDAFlavin-dependent tryptophan halogenase PrnA 1.14.19.9 0.664
2j3n FADThioredoxin reductase 1, cytoplasmic 1.8.1.9 0.664
2vq7 FADPutative flavin-containing monooxygenase / 0.664
2yg5 FADPutrescine oxidase / 0.664
4g6h FADRotenone-insensitive NADH-ubiquinone oxidoreductase, mitochondrial 1.6.5.9 0.664
1geu FADGlutathione reductase 1.8.1.7 0.663
1sez FADProtoporphyrinogen oxidase, mitochondrial 1.3.3.4 0.663
4b69 FADL-ornithine N(5)-monooxygenase / 0.662
4usq FADPyridine nucleotide-disulfide oxidoreductase / 0.661
3b6d FAECholesterol oxidase 1.1.3.6 0.660
3s5w FADL-ornithine N(5)-monooxygenase / 0.660
4bur FADApoptosis-inducing factor 1, mitochondrial 1.1.1 0.660
4gus FADLysine-specific histone demethylase 1B 1 0.660
5fs7 FADApoptosis-inducing factor 1, mitochondrial 1.1.1 0.660
1y56 ATPUncharacterized protein / 0.659
3ics FADCoenzyme A disulfide reductase / 0.659
4x4j FADPutative oxygenase / 0.658
5hhf FDAUDP-galactopyranose mutase / 0.658
4yl2 FMNLactate oxidase / 0.656
1cl0 FADThioredoxin reductase 1.8.1.9 0.655
3gyi FADCholesterol oxidase 1.1.3.6 0.655
2eq9 FADDihydrolipoyl dehydrogenase / 0.654
3icr FADCoenzyme A disulfide reductase / 0.654
4nmd FDABifunctional protein PutA / 0.654
5cho FADFlavin reductase / 0.654
2gvc FADThiol-specific monooxygenase 1.14.13 0.653
1mo9 FAD2-oxopropyl-CoM reductase, carboxylating 1.8.1.5 0.652
4b65 FADL-ornithine N(5)-monooxygenase / 0.652
4mo2 FDAUDP-galactopyranose mutase / 0.652
2gr3 FADFerredoxin reductase / 0.651
2wes FADTryptophan 5-halogenase / 0.651
4h4z FADBiphenyl dioxygenase ferredoxin reductase subunit / 0.651
2ijg FADCryptochrome DASH, chloroplastic/mitochondrial / 0.650
3lb8 FADPutidaredoxin reductase 1.18.1.5 0.650
4b64 FADL-ornithine N(5)-monooxygenase / 0.650