Logo scPDB

sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

Logo CNRS Logo Unistra
Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
3svp JK5 Nitric oxide synthase, brain 1.14.13.39

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
3svp JK5Nitric oxide synthase, brain 1.14.13.39 0.920
3rql X2DNitric oxide synthase, brain 1.14.13.39 0.792
1n35 CH1RNA-directed RNA polymerase lambda-3 2.7.7.48 0.744
1n38 U3HRNA-directed RNA polymerase lambda-3 2.7.7.48 0.744
1wet GUNHTH-type transcriptional repressor PurR / 0.744
2cgw 3C3Serine/threonine-protein kinase Chk1 2.7.11.1 0.744
2d09 FLVBiflaviolin synthase CYP158A2 / 0.744
2fzk CTPAspartate carbamoyltransferase regulatory chain / 0.744
2oap ANPType II secretion system protein (GspE-2) / 0.744
2zs9 ADPPantothenate kinase 2.7.1.33 0.744
3cwq ADPParA family chromosome partitioning protein / 0.744
3f8p NADNADH oxidase/thioredoxin reductase / 0.744
3f8r NAPNADH oxidase/thioredoxin reductase / 0.744
3fzf ATPHeat shock cognate 71 kDa protein / 0.744
3u9d ATPActin, alpha skeletal muscle / 0.744
3ypi PGHTriosephosphate isomerase 5.3.1.1 0.744
3zzn ADPL-lactate dehydrogenase / 0.744
5bnt NAPAspartate-semialdehyde dehydrogenase 1.2.1.11 0.744
3uft HW7Nitric oxide synthase, brain 1.14.13.39 0.739
3pne 8AXNitric oxide synthase, brain 1.14.13.39 0.737
3rqm X2ENitric oxide synthase, brain 1.14.13.39 0.720
3jwt JI5Nitric oxide synthase, brain 1.14.13.39 0.711
3png 8CXNitric oxide synthase, brain 1.14.13.39 0.707
3nlz 3XDNitric oxide synthase, brain 1.14.13.39 0.699
3rqj Y2BNitric oxide synthase, brain 1.14.13.39 0.698
3rqk X2CNitric oxide synthase, brain 1.14.13.39 0.693
3jx3 JI5Nitric oxide synthase, brain 1.14.13.39 0.691
3jx6 JI5Nitric oxide synthase, brain 1.14.13.39 0.677
4eux HW1Nitric oxide synthase, brain 1.14.13.39 0.676
3ufu HW8Nitric oxide synthase, brain 1.14.13.39 0.674
4cx4 HW9Nitric oxide synthase, brain 1.14.13.39 0.674
4k5g Q13Nitric oxide synthase, brain 1.14.13.39 0.669
3nlq JRRNitric oxide synthase, brain 1.14.13.39 0.667
4imt 1EWNitric oxide synthase, brain 1.14.13.39 0.662
1fp6 ADPNitrogenase iron protein 1 1.18.6.1 0.660
1h48 C5P2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase 4.6.1.12 0.660
1yra GDPGPN-loop GTPase PAB0955 / 0.660
2hru ADPPhosphoribosylformylglycinamidine synthase subunit PurL / 0.660
2xtn GTPGTPase IMAP family member 2 / 0.660
3kjg ADPCO dehydrogenase/acetyl-CoA synthase complex, accessory protein CooC / 0.660
4nxv GDPMitochondrial dynamics protein MID51 / 0.660
4nxx GDPMitochondrial dynamics protein MID51 / 0.660
3nly 3XCNitric oxide synthase, brain 1.14.13.39 0.653