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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
3r8z Z63 Cyclin-dependent kinase 2 2.7.11.22

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
3r8z Z63Cyclin-dependent kinase 2 2.7.11.22 0.900
3qtq X35Cyclin-dependent kinase 2 2.7.11.22 0.850
3rk9 09ZCyclin-dependent kinase 2 2.7.11.22 0.779
3rjc 06ZCyclin-dependent kinase 2 2.7.11.22 0.778
3rk7 08ZCyclin-dependent kinase 2 2.7.11.22 0.769
3rkb 12ZCyclin-dependent kinase 2 2.7.11.22 0.754
1g7u PEP2-dehydro-3-deoxyphosphooctonate aldolase 2.5.1.55 0.744
4e5i 0N9Polymerase acidic protein / 0.744
3qqk X02Cyclin-dependent kinase 2 2.7.11.22 0.737
3rni 21ZCyclin-dependent kinase 2 2.7.11.22 0.728
3rk5 07ZCyclin-dependent kinase 2 2.7.11.22 0.724
3o0g 3O0Cyclin-dependent-like kinase 5 2.7.11.1 0.720
3s0o 50ZCyclin-dependent kinase 2 2.7.11.22 0.713
3ral 04ZCyclin-dependent kinase 2 2.7.11.22 0.706
3qtw X3ACyclin-dependent kinase 2 2.7.11.22 0.697
3r9h Z67Cyclin-dependent kinase 2 2.7.11.22 0.683
3rmf 20ZCyclin-dependent kinase 2 2.7.11.22 0.681
3qtx X43Cyclin-dependent kinase 2 2.7.11.22 0.678
3r28 XA0Cyclin-dependent kinase 2 2.7.11.22 0.678
3qtz X42Cyclin-dependent kinase 2 2.7.11.22 0.677
2wms ZYSSerine/threonine-protein kinase Chk1 2.7.11.1 0.676
3s1h 56ZCyclin-dependent kinase 2 2.7.11.22 0.676
3qtu X44Cyclin-dependent kinase 2 2.7.11.22 0.675
3r7y Z04Cyclin-dependent kinase 2 2.7.11.22 0.674
3r9d X6BCyclin-dependent kinase 2 2.7.11.22 0.674
3r83 Z14Cyclin-dependent kinase 2 2.7.11.22 0.672
3qrt X14Cyclin-dependent kinase 2 2.7.11.22 0.669
3r8u Z31Cyclin-dependent kinase 2 2.7.11.22 0.669
3rm7 19ZCyclin-dependent kinase 2 2.7.11.22 0.669
3s00 Z60Cyclin-dependent kinase 2 2.7.11.22 0.668
3qx2 X63Cyclin-dependent kinase 2 2.7.11.22 0.667
3qxp X64Cyclin-dependent kinase 2 2.7.11.22 0.666
3r7v Z02Cyclin-dependent kinase 2 2.7.11.22 0.666
2bts U32Cyclin-dependent kinase 2 2.7.11.22 0.662
3rpv 26ZCyclin-dependent kinase 2 2.7.11.22 0.662
3qx4 X4BCyclin-dependent kinase 2 2.7.11.22 0.661
1p2a 5BNCyclin-dependent kinase 2 2.7.11.22 0.660
2vtq LZACyclin-dependent kinase 2 2.7.11.22 0.660
4lyn 1YGCyclin-dependent kinase 2 2.7.11.22 0.660
1h0v UN4Cyclin-dependent kinase 2 2.7.11.22 0.657
4ccu AWFALK tyrosine kinase receptor 2.7.10.1 0.656
4cd0 AWJALK tyrosine kinase receptor 2.7.10.1 0.655
4fkg 4CKCyclin-dependent kinase 2 2.7.11.22 0.655
4ccb OFGALK tyrosine kinase receptor 2.7.10.1 0.654
3r73 X87Cyclin-dependent kinase 2 2.7.11.22 0.652
3igg EFQCyclin-dependent kinase 2 2.7.11.22 0.651
3qwj X6ACyclin-dependent kinase 2 2.7.11.22 0.651
3qzi X72Cyclin-dependent kinase 2 2.7.11.22 0.651
4ek6 10KCyclin-dependent kinase 2 2.7.11.22 0.651